miRNA display CGI


Results 21 - 40 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13950 5' -61.7 NC_003521.1 + 222851 0.71 0.469056
Target:  5'- cUGCGCGUUuucauCCGCCAGCGCCucUGCUg -3'
miRNA:   3'- -ACGUGCAGcc---GGUGGUCGCGGc-ACGA- -5'
13950 5' -61.7 NC_003521.1 + 222023 0.66 0.749585
Target:  5'- aGCAC-UUGGCCACgcgaaagCAGCGCUG-GCc -3'
miRNA:   3'- aCGUGcAGCCGGUG-------GUCGCGGCaCGa -5'
13950 5' -61.7 NC_003521.1 + 220774 0.66 0.732186
Target:  5'- aGCACcaggaGGCCACCA-CGCUGcUGCUc -3'
miRNA:   3'- aCGUGcag--CCGGUGGUcGCGGC-ACGA- -5'
13950 5' -61.7 NC_003521.1 + 219346 0.68 0.666099
Target:  5'- aGCuuGUCcuuguaGGCCGCCAGCugcacGCCGUGa- -3'
miRNA:   3'- aCGugCAG------CCGGUGGUCG-----CGGCACga -5'
13950 5' -61.7 NC_003521.1 + 219103 0.67 0.685213
Target:  5'- gGCAuCGUCaccaGCCACaugagCAGCGCCGUaGCg -3'
miRNA:   3'- aCGU-GCAGc---CGGUG-----GUCGCGGCA-CGa -5'
13950 5' -61.7 NC_003521.1 + 219076 0.67 0.704171
Target:  5'- cGCACGUCGGCaCcCCGaCGCCGa--- -3'
miRNA:   3'- aCGUGCAGCCG-GuGGUcGCGGCacga -5'
13950 5' -61.7 NC_003521.1 + 218610 0.79 0.157225
Target:  5'- gGUACGguUCGGCCGCCAGCGCgCG-GCg -3'
miRNA:   3'- aCGUGC--AGCCGGUGGUCGCG-GCaCGa -5'
13950 5' -61.7 NC_003521.1 + 217607 0.68 0.666099
Target:  5'- aGUACGaggacCGGCCGCCGuccGCcaCCGUGCUg -3'
miRNA:   3'- aCGUGCa----GCCGGUGGU---CGc-GGCACGA- -5'
13950 5' -61.7 NC_003521.1 + 217042 0.71 0.451633
Target:  5'- gGC-CGUcaCGGCCAacauaaagcCCAGCGCCGUGaCg -3'
miRNA:   3'- aCGuGCA--GCCGGU---------GGUCGCGGCAC-Ga -5'
13950 5' -61.7 NC_003521.1 + 216892 0.67 0.694716
Target:  5'- gGCcauccaGGCCACCAGCuuGUCGUGCg -3'
miRNA:   3'- aCGugcag-CCGGUGGUCG--CGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 216385 0.66 0.750492
Target:  5'- cUGC-CG-CGGCCuCC-GCGCCGcGCUc -3'
miRNA:   3'- -ACGuGCaGCCGGuGGuCGCGGCaCGA- -5'
13950 5' -61.7 NC_003521.1 + 214012 0.66 0.780733
Target:  5'- -cUACGU-GGCCGCCaccacggccuucugcGGCGCCGUcugGCUg -3'
miRNA:   3'- acGUGCAgCCGGUGG---------------UCGCGGCA---CGA- -5'
13950 5' -61.7 NC_003521.1 + 213958 0.71 0.477895
Target:  5'- cGCGgGUgGG-CGCCGGCucggGCCGUGCUa -3'
miRNA:   3'- aCGUgCAgCCgGUGGUCG----CGGCACGA- -5'
13950 5' -61.7 NC_003521.1 + 213759 0.67 0.69187
Target:  5'- gUGCugGUCaucacccuguggauGGCgugCACCGGCGCCGUcaugacguGCg -3'
miRNA:   3'- -ACGugCAG--------------CCG---GUGGUCGCGGCA--------CGa -5'
13950 5' -61.7 NC_003521.1 + 212701 0.66 0.741381
Target:  5'- gGCACGUgucgcgacgccUGGCCAUCAuGgGCC-UGCUg -3'
miRNA:   3'- aCGUGCA-----------GCCGGUGGU-CgCGGcACGA- -5'
13950 5' -61.7 NC_003521.1 + 209982 0.73 0.347884
Target:  5'- cGgACGgcccagaCGGCCACCAGCGucCCGUGUUg -3'
miRNA:   3'- aCgUGCa------GCCGGUGGUCGC--GGCACGA- -5'
13950 5' -61.7 NC_003521.1 + 204224 0.68 0.627635
Target:  5'- gUGCGaguCGUCGGCCACC--CGCCGccagGCc -3'
miRNA:   3'- -ACGU---GCAGCCGGUGGucGCGGCa---CGa -5'
13950 5' -61.7 NC_003521.1 + 204048 0.68 0.61801
Target:  5'- aGCGCGU-GGCCcuGCCAGuCGCCGcagucGCa -3'
miRNA:   3'- aCGUGCAgCCGG--UGGUC-GCGGCa----CGa -5'
13950 5' -61.7 NC_003521.1 + 201829 0.7 0.532517
Target:  5'- aGCGCcacauCCACCAGCGCCuGUGCUg -3'
miRNA:   3'- aCGUGcagccGGUGGUCGCGG-CACGA- -5'
13950 5' -61.7 NC_003521.1 + 201803 0.68 0.646888
Target:  5'- cGCGCcac-GUCGCCGGCGCCGUaGCg -3'
miRNA:   3'- aCGUGcagcCGGUGGUCGCGGCA-CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.