miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13950 5' -61.7 NC_003521.1 + 240658 0.7 0.523243
Target:  5'- gGC-CGaagCGGCgGCCGGaGCCGUGCa -3'
miRNA:   3'- aCGuGCa--GCCGgUGGUCgCGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 239887 0.67 0.685213
Target:  5'- cGCAUGgcUCGGCUggugguguuaGCCAugaaCGCCGUGCg -3'
miRNA:   3'- aCGUGC--AGCCGG----------UGGUc---GCGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 239486 0.7 0.532517
Target:  5'- aGCGCcacauCCACCAGCGCCuGUGCUg -3'
miRNA:   3'- aCGUGcagccGGUGGUCGCGG-CACGA- -5'
13950 5' -61.7 NC_003521.1 + 238220 0.67 0.675672
Target:  5'- cUGgGCGUCGGCa--CGGCGUCGaGCg -3'
miRNA:   3'- -ACgUGCAGCCGgugGUCGCGGCaCGa -5'
13950 5' -61.7 NC_003521.1 + 235552 0.67 0.710759
Target:  5'- aGCACGUCaGGCCccugugguacaacaACCcGCGggaCGUGCg -3'
miRNA:   3'- aCGUGCAG-CCGG--------------UGGuCGCg--GCACGa -5'
13950 5' -61.7 NC_003521.1 + 232979 0.66 0.741381
Target:  5'- gGC-CGUCcGCCACCcccucgucuucuGGCGCCGgaugGCc -3'
miRNA:   3'- aCGuGCAGcCGGUGG------------UCGCGGCa---CGa -5'
13950 5' -61.7 NC_003521.1 + 232405 0.69 0.607434
Target:  5'- cUGCGCcugCGGCacggcaaCGCCAGCGCC-UGCg -3'
miRNA:   3'- -ACGUGca-GCCG-------GUGGUCGCGGcACGa -5'
13950 5' -61.7 NC_003521.1 + 227876 0.68 0.656502
Target:  5'- gUGUugGagGGCCgACCGGCGCCcaaGCc -3'
miRNA:   3'- -ACGugCagCCGG-UGGUCGCGGca-CGa -5'
13950 5' -61.7 NC_003521.1 + 226912 0.68 0.637264
Target:  5'- aGCGCGgccuccgCGGCCcCCuccGCGCCGgGCc -3'
miRNA:   3'- aCGUGCa------GCCGGuGGu--CGCGGCaCGa -5'
13950 5' -61.7 NC_003521.1 + 226055 0.66 0.768429
Target:  5'- aGCACcUCGGCCACgAaggcGCGCCccgGCc -3'
miRNA:   3'- aCGUGcAGCCGGUGgU----CGCGGca-CGa -5'
13950 5' -61.7 NC_003521.1 + 225849 0.68 0.656502
Target:  5'- aGCGCGa-GGCCGCCgAGCGCCa---- -3'
miRNA:   3'- aCGUGCagCCGGUGG-UCGCGGcacga -5'
13950 5' -61.7 NC_003521.1 + 225532 0.67 0.694716
Target:  5'- cGCGCGUCGacgaacgcucGUCACCAG-GCaGUGCa -3'
miRNA:   3'- aCGUGCAGC----------CGGUGGUCgCGgCACGa -5'
13950 5' -61.7 NC_003521.1 + 225150 0.67 0.713574
Target:  5'- uUGCGgacccaGUCGcgcaCCACCucGGCGCUGUGCUg -3'
miRNA:   3'- -ACGUg-----CAGCc---GGUGG--UCGCGGCACGA- -5'
13950 5' -61.7 NC_003521.1 + 225003 0.69 0.598795
Target:  5'- cGaCGCGcUGGCCGCCuGCGUCG-GCg -3'
miRNA:   3'- aC-GUGCaGCCGGUGGuCGCGGCaCGa -5'
13950 5' -61.7 NC_003521.1 + 224754 0.69 0.570148
Target:  5'- aGCGCGUCGGggcuCCGGCaGuuGUGCa -3'
miRNA:   3'- aCGUGCAGCCggu-GGUCG-CggCACGa -5'
13950 5' -61.7 NC_003521.1 + 224366 0.67 0.685213
Target:  5'- aUGCGCGgcgaguUCGGCgacCGCCGGCGCgCGcGCc -3'
miRNA:   3'- -ACGUGC------AGCCG---GUGGUCGCG-GCaCGa -5'
13950 5' -61.7 NC_003521.1 + 224094 0.67 0.722915
Target:  5'- cGCGCGccggCGGUCGCCGaacuCGCCGcGCa -3'
miRNA:   3'- aCGUGCa---GCCGGUGGUc---GCGGCaCGa -5'
13950 5' -61.7 NC_003521.1 + 223793 0.68 0.637264
Target:  5'- cGC-CGUgGGCCGCCAgacgacgggccuGCGCCGccGCc -3'
miRNA:   3'- aCGuGCAgCCGGUGGU------------CGCGGCa-CGa -5'
13950 5' -61.7 NC_003521.1 + 223668 0.7 0.551235
Target:  5'- cUGCGCcUCGGCC-UC-GCGCCGcUGCUg -3'
miRNA:   3'- -ACGUGcAGCCGGuGGuCGCGGC-ACGA- -5'
13950 5' -61.7 NC_003521.1 + 222959 0.67 0.704171
Target:  5'- cGCACGccCGGCCGCaccgaGGUcgaGCCGcUGCUc -3'
miRNA:   3'- aCGUGCa-GCCGGUGg----UCG---CGGC-ACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.