Results 41 - 60 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13952 | 5' | -60.2 | NC_003521.1 | + | 130304 | 0.66 | 0.816903 |
Target: 5'- ---gGCcGCGGCGccgcgcaUCCAGGuCCACUAc -3' miRNA: 3'- aagaCGaCGCCGC-------AGGUCCuGGUGGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 131222 | 0.68 | 0.660779 |
Target: 5'- ---cGUgacggGCGGCGg-CGGGGCCACCAg -3' miRNA: 3'- aagaCGa----CGCCGCagGUCCUGGUGGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 136974 | 0.67 | 0.747116 |
Target: 5'- -gCUGCcaguccucgGCGGCGUCCugcucGGGcCCGCCc -3' miRNA: 3'- aaGACGa--------CGCCGCAGG-----UCCuGGUGGu -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 140479 | 0.66 | 0.795685 |
Target: 5'- aUCaUGCUGCacGGCGacucggccgccaagaUCCAGGAgCGCUAu -3' miRNA: 3'- aAG-ACGACG--CCGC---------------AGGUCCUgGUGGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 142774 | 0.69 | 0.611697 |
Target: 5'- gUCcGCgGCGGCGUCguCGGuGCCACCAa -3' miRNA: 3'- aAGaCGaCGCCGCAG--GUCcUGGUGGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 144098 | 0.69 | 0.621512 |
Target: 5'- cUUCUGCcucaUGCGGC-UgCuGGACCGCCGc -3' miRNA: 3'- -AAGACG----ACGCCGcAgGuCCUGGUGGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 144766 | 0.69 | 0.601896 |
Target: 5'- aUCUGCcgacaGuCGGCGUCCAGGuCCuCCu -3' miRNA: 3'- aAGACGa----C-GCCGCAGGUCCuGGuGGu -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 151327 | 0.7 | 0.543734 |
Target: 5'- ---gGCggGUGGCGUCCgAGGGCCugCGc -3' miRNA: 3'- aagaCGa-CGCCGCAGG-UCCUGGugGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 164548 | 0.73 | 0.384433 |
Target: 5'- -gCUGCUGCGGUggcuGUCCAGGAgCGgCGg -3' miRNA: 3'- aaGACGACGCCG----CAGGUCCUgGUgGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 164795 | 0.67 | 0.718881 |
Target: 5'- -gCUGCUGCGa-GUCCGGGuCCGgCAg -3' miRNA: 3'- aaGACGACGCcgCAGGUCCuGGUgGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 169705 | 0.68 | 0.660779 |
Target: 5'- aUCUGCauagucGUGGCGUUCAGGugCGuCCc -3' miRNA: 3'- aAGACGa-----CGCCGCAGGUCCugGU-GGu -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 172956 | 0.67 | 0.71602 |
Target: 5'- -cCUGCUGaCGGUGuaggaggggguucaUCCGGG-CCGCCu -3' miRNA: 3'- aaGACGAC-GCCGC--------------AGGUCCuGGUGGu -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 174954 | 0.68 | 0.699702 |
Target: 5'- ---gGCUGCaGUGUCUgaAGGACCugCAu -3' miRNA: 3'- aagaCGACGcCGCAGG--UCCUGGugGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 181229 | 0.67 | 0.718881 |
Target: 5'- ---aGCUGCaGGUGgagaUCCAGGACC-CCGc -3' miRNA: 3'- aagaCGACG-CCGC----AGGUCCUGGuGGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 188783 | 0.66 | 0.80086 |
Target: 5'- -gCUGCUGCu-CGUCUGGGuccCCGCCAc -3' miRNA: 3'- aaGACGACGccGCAGGUCCu--GGUGGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 192741 | 0.75 | 0.303512 |
Target: 5'- uUUCUuuuuCUGCGGCGUCCGcGGGCCGuCCAu -3' miRNA: 3'- -AAGAc---GACGCCGCAGGU-CCUGGU-GGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 218030 | 0.69 | 0.641159 |
Target: 5'- gUUCUuggGCggcgGCGGCGUCCgcagguagaugAGGuCCACCGu -3' miRNA: 3'- -AAGA---CGa---CGCCGCAGG-----------UCCuGGUGGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 218765 | 0.68 | 0.687119 |
Target: 5'- -cCUGCUGgccUGGUucgccuuucccgacGUCCGGGGCCACUg -3' miRNA: 3'- aaGACGAC---GCCG--------------CAGGUCCUGGUGGu -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 219473 | 0.66 | 0.821034 |
Target: 5'- cUCUGCUGCcuGGCGaCCgccaucaugggccugGGGcucaGCCGCCAc -3' miRNA: 3'- aAGACGACG--CCGCaGG---------------UCC----UGGUGGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 222423 | 0.66 | 0.774515 |
Target: 5'- -cCUGCUGgccacgggGGCGcUgCAGGACCAUCAu -3' miRNA: 3'- aaGACGACg-------CCGC-AgGUCCUGGUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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