miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13952 5' -60.2 NC_003521.1 + 73072 0.67 0.737787
Target:  5'- -gCUGCUGCugguggugguaGGCGUgCGGGucuuggagcuguGCCGCCGa -3'
miRNA:   3'- aaGACGACG-----------CCGCAgGUCC------------UGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 73555 0.66 0.783424
Target:  5'- gUCUGCU-CGGCGUCCu--GCCGCa- -3'
miRNA:   3'- aAGACGAcGCCGCAGGuccUGGUGgu -5'
13952 5' -60.2 NC_003521.1 + 76253 0.67 0.718881
Target:  5'- --gUGCUGaCGGCGcCCggcgAGGGCCGCUc -3'
miRNA:   3'- aagACGAC-GCCGCaGG----UCCUGGUGGu -5'
13952 5' -60.2 NC_003521.1 + 79669 0.66 0.792208
Target:  5'- -aCUGUUGCGaacgaCGUCCGcGACCGCCc -3'
miRNA:   3'- aaGACGACGCc----GCAGGUcCUGGUGGu -5'
13952 5' -60.2 NC_003521.1 + 87760 0.66 0.80086
Target:  5'- -gCUGCggacagGUGGCGcaggCCAGGGCCAg-- -3'
miRNA:   3'- aaGACGa-----CGCCGCa---GGUCCUGGUggu -5'
13952 5' -60.2 NC_003521.1 + 100437 0.68 0.680313
Target:  5'- ---aGCgGCGGCGcUCgggagCAGGGCCGCCGa -3'
miRNA:   3'- aagaCGaCGCCGC-AG-----GUCCUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 101290 0.66 0.80937
Target:  5'- ---aGCUGCacgGGCGUgcccgCCAGGACgCGCCc -3'
miRNA:   3'- aagaCGACG---CCGCA-----GGUCCUG-GUGGu -5'
13952 5' -60.2 NC_003521.1 + 102704 0.69 0.640177
Target:  5'- aUCUGCcgcggccUGCGGCGcgUCuGGAUCGCCGu -3'
miRNA:   3'- aAGACG-------ACGCCGCa-GGuCCUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 108950 0.66 0.792208
Target:  5'- -gCUGUcgGUGGCGUCUAuGACCACg- -3'
miRNA:   3'- aaGACGa-CGCCGCAGGUcCUGGUGgu -5'
13952 5' -60.2 NC_003521.1 + 112374 0.67 0.737787
Target:  5'- ---gGCUGCGGCGUCUcGu-CCACCu -3'
miRNA:   3'- aagaCGACGCCGCAGGuCcuGGUGGu -5'
13952 5' -60.2 NC_003521.1 + 114965 0.66 0.774515
Target:  5'- -gCUGCUGCGGCGUCagucGCCugUu -3'
miRNA:   3'- aaGACGACGCCGCAGguccUGGugGu -5'
13952 5' -60.2 NC_003521.1 + 116828 0.67 0.76458
Target:  5'- -gCUGCaGCGGUuUCCAGaccugacGGCCGCCGa -3'
miRNA:   3'- aaGACGaCGCCGcAGGUC-------CUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 117503 0.71 0.51532
Target:  5'- ---gGCgGCGGCG-CCGGGAgCCGCCGc -3'
miRNA:   3'- aagaCGaCGCCGCaGGUCCU-GGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 118056 0.66 0.783424
Target:  5'- -gCUGCuucUGaCGGUGUCCGccGCCACCAu -3'
miRNA:   3'- aaGACG---AC-GCCGCAGGUccUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 118936 0.69 0.601896
Target:  5'- ---gGCgGCGGCGUCCcgucAGGGCCAgCGc -3'
miRNA:   3'- aagaCGaCGCCGCAGG----UCCUGGUgGU- -5'
13952 5' -60.2 NC_003521.1 + 119768 0.69 0.641159
Target:  5'- aUCUGCU-CGGCcUCCAGGcugcgguCCACCu -3'
miRNA:   3'- aAGACGAcGCCGcAGGUCCu------GGUGGu -5'
13952 5' -60.2 NC_003521.1 + 120990 0.66 0.792208
Target:  5'- --gUGCcccugGUGGCcacgGUCCAGGGCCACa- -3'
miRNA:   3'- aagACGa----CGCCG----CAGGUCCUGGUGgu -5'
13952 5' -60.2 NC_003521.1 + 122535 0.68 0.699702
Target:  5'- -gUUGCgGCGGCGUCCcuagAGG-UCGCCGc -3'
miRNA:   3'- aaGACGaCGCCGCAGG----UCCuGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 122930 0.67 0.737787
Target:  5'- --gUGCUG-GGCGccucgaucgcgcUCCAGGACCugCu -3'
miRNA:   3'- aagACGACgCCGC------------AGGUCCUGGugGu -5'
13952 5' -60.2 NC_003521.1 + 127279 0.71 0.524728
Target:  5'- ---cGCgGCGGCGUCguCGGGcACCGCCAc -3'
miRNA:   3'- aagaCGaCGCCGCAG--GUCC-UGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.