Results 21 - 40 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13952 | 5' | -60.2 | NC_003521.1 | + | 151327 | 0.7 | 0.543734 |
Target: 5'- ---gGCggGUGGCGUCCgAGGGCCugCGc -3' miRNA: 3'- aagaCGa-CGCCGCAGG-UCCUGGugGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 144766 | 0.69 | 0.601896 |
Target: 5'- aUCUGCcgacaGuCGGCGUCCAGGuCCuCCu -3' miRNA: 3'- aAGACGa----C-GCCGCAGGUCCuGGuGGu -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 144098 | 0.69 | 0.621512 |
Target: 5'- cUUCUGCcucaUGCGGC-UgCuGGACCGCCGc -3' miRNA: 3'- -AAGACG----ACGCCGcAgGuCCUGGUGGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 142774 | 0.69 | 0.611697 |
Target: 5'- gUCcGCgGCGGCGUCguCGGuGCCACCAa -3' miRNA: 3'- aAGaCGaCGCCGCAG--GUCcUGGUGGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 140479 | 0.66 | 0.795685 |
Target: 5'- aUCaUGCUGCacGGCGacucggccgccaagaUCCAGGAgCGCUAu -3' miRNA: 3'- aAG-ACGACG--CCGC---------------AGGUCCUgGUGGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 136974 | 0.67 | 0.747116 |
Target: 5'- -gCUGCcaguccucgGCGGCGUCCugcucGGGcCCGCCc -3' miRNA: 3'- aaGACGa--------CGCCGCAGG-----UCCuGGUGGu -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 131222 | 0.68 | 0.660779 |
Target: 5'- ---cGUgacggGCGGCGg-CGGGGCCACCAg -3' miRNA: 3'- aagaCGa----CGCCGCagGUCCUGGUGGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 130304 | 0.66 | 0.816903 |
Target: 5'- ---gGCcGCGGCGccgcgcaUCCAGGuCCACUAc -3' miRNA: 3'- aagaCGaCGCCGC-------AGGUCCuGGUGGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 127279 | 0.71 | 0.524728 |
Target: 5'- ---cGCgGCGGCGUCguCGGGcACCGCCAc -3' miRNA: 3'- aagaCGaCGCCGCAG--GUCC-UGGUGGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 122930 | 0.67 | 0.737787 |
Target: 5'- --gUGCUG-GGCGccucgaucgcgcUCCAGGACCugCu -3' miRNA: 3'- aagACGACgCCGC------------AGGUCCUGGugGu -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 122535 | 0.68 | 0.699702 |
Target: 5'- -gUUGCgGCGGCGUCCcuagAGG-UCGCCGc -3' miRNA: 3'- aaGACGaCGCCGCAGG----UCCuGGUGGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 120990 | 0.66 | 0.792208 |
Target: 5'- --gUGCcccugGUGGCcacgGUCCAGGGCCACa- -3' miRNA: 3'- aagACGa----CGCCG----CAGGUCCUGGUGgu -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 119768 | 0.69 | 0.641159 |
Target: 5'- aUCUGCU-CGGCcUCCAGGcugcgguCCACCu -3' miRNA: 3'- aAGACGAcGCCGcAGGUCCu------GGUGGu -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 118936 | 0.69 | 0.601896 |
Target: 5'- ---gGCgGCGGCGUCCcgucAGGGCCAgCGc -3' miRNA: 3'- aagaCGaCGCCGCAGG----UCCUGGUgGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 118056 | 0.66 | 0.783424 |
Target: 5'- -gCUGCuucUGaCGGUGUCCGccGCCACCAu -3' miRNA: 3'- aaGACG---AC-GCCGCAGGUccUGGUGGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 117503 | 0.71 | 0.51532 |
Target: 5'- ---gGCgGCGGCG-CCGGGAgCCGCCGc -3' miRNA: 3'- aagaCGaCGCCGCaGGUCCU-GGUGGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 116828 | 0.67 | 0.76458 |
Target: 5'- -gCUGCaGCGGUuUCCAGaccugacGGCCGCCGa -3' miRNA: 3'- aaGACGaCGCCGcAGGUC-------CUGGUGGU- -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 114965 | 0.66 | 0.774515 |
Target: 5'- -gCUGCUGCGGCGUCagucGCCugUu -3' miRNA: 3'- aaGACGACGCCGCAGguccUGGugGu -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 112374 | 0.67 | 0.737787 |
Target: 5'- ---gGCUGCGGCGUCUcGu-CCACCu -3' miRNA: 3'- aagaCGACGCCGCAGGuCcuGGUGGu -5' |
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13952 | 5' | -60.2 | NC_003521.1 | + | 108950 | 0.66 | 0.792208 |
Target: 5'- -gCUGUcgGUGGCGUCUAuGACCACg- -3' miRNA: 3'- aaGACGa-CGCCGCAGGUcCUGGUGgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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