miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13952 5' -60.2 NC_003521.1 + 233061 0.72 0.451615
Target:  5'- ---cGuCUGCGGCGUCUgcuGGGACUGCCGc -3'
miRNA:   3'- aagaC-GACGCCGCAGG---UCCUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 227220 0.69 0.641159
Target:  5'- cUCUGCggGCGGCGccgCCAuGGAuuUCGCCGg -3'
miRNA:   3'- aAGACGa-CGCCGCa--GGU-CCU--GGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 227104 0.66 0.80937
Target:  5'- -cCUGCccggcgcgGCGGCGggCgAGGACC-CCAu -3'
miRNA:   3'- aaGACGa-------CGCCGCa-GgUCCUGGuGGU- -5'
13952 5' -60.2 NC_003521.1 + 226977 0.66 0.817732
Target:  5'- ---cGCUGCcuGUGUCUGGGuCCGCCGa -3'
miRNA:   3'- aagaCGACGc-CGCAGGUCCuGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 226636 0.68 0.69003
Target:  5'- -cCUGCgGCGGCGUCa---GCCGCCGc -3'
miRNA:   3'- aaGACGaCGCCGCAGguccUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 224366 0.67 0.765489
Target:  5'- --aUGC-GCGGCGagUUCGGcGACCGCCGg -3'
miRNA:   3'- aagACGaCGCCGC--AGGUC-CUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 223859 0.73 0.392463
Target:  5'- -gCUGCUGCGGCuGUCCcucGGGuACCACg- -3'
miRNA:   3'- aaGACGACGCCG-CAGG---UCC-UGGUGgu -5'
13952 5' -60.2 NC_003521.1 + 223775 0.67 0.728372
Target:  5'- ---cGCUGuCGGCG-CCGuuaccgccguGGGCCGCCAg -3'
miRNA:   3'- aagaCGAC-GCCGCaGGU----------CCUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 222423 0.66 0.774515
Target:  5'- -cCUGCUGgccacgggGGCGcUgCAGGACCAUCAu -3'
miRNA:   3'- aaGACGACg-------CCGC-AgGUCCUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 219473 0.66 0.821034
Target:  5'- cUCUGCUGCcuGGCGaCCgccaucaugggccugGGGcucaGCCGCCAc -3'
miRNA:   3'- aAGACGACG--CCGCaGG---------------UCC----UGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 218765 0.68 0.687119
Target:  5'- -cCUGCUGgccUGGUucgccuuucccgacGUCCGGGGCCACUg -3'
miRNA:   3'- aaGACGAC---GCCG--------------CAGGUCCUGGUGGu -5'
13952 5' -60.2 NC_003521.1 + 218030 0.69 0.641159
Target:  5'- gUUCUuggGCggcgGCGGCGUCCgcagguagaugAGGuCCACCGu -3'
miRNA:   3'- -AAGA---CGa---CGCCGCAGG-----------UCCuGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 192741 0.75 0.303512
Target:  5'- uUUCUuuuuCUGCGGCGUCCGcGGGCCGuCCAu -3'
miRNA:   3'- -AAGAc---GACGCCGCAGGU-CCUGGU-GGU- -5'
13952 5' -60.2 NC_003521.1 + 188783 0.66 0.80086
Target:  5'- -gCUGCUGCu-CGUCUGGGuccCCGCCAc -3'
miRNA:   3'- aaGACGACGccGCAGGUCCu--GGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 181229 0.67 0.718881
Target:  5'- ---aGCUGCaGGUGgagaUCCAGGACC-CCGc -3'
miRNA:   3'- aagaCGACG-CCGC----AGGUCCUGGuGGU- -5'
13952 5' -60.2 NC_003521.1 + 174954 0.68 0.699702
Target:  5'- ---gGCUGCaGUGUCUgaAGGACCugCAu -3'
miRNA:   3'- aagaCGACGcCGCAGG--UCCUGGugGU- -5'
13952 5' -60.2 NC_003521.1 + 172956 0.67 0.71602
Target:  5'- -cCUGCUGaCGGUGuaggaggggguucaUCCGGG-CCGCCu -3'
miRNA:   3'- aaGACGAC-GCCGC--------------AGGUCCuGGUGGu -5'
13952 5' -60.2 NC_003521.1 + 169705 0.68 0.660779
Target:  5'- aUCUGCauagucGUGGCGUUCAGGugCGuCCc -3'
miRNA:   3'- aAGACGa-----CGCCGCAGGUCCugGU-GGu -5'
13952 5' -60.2 NC_003521.1 + 164795 0.67 0.718881
Target:  5'- -gCUGCUGCGa-GUCCGGGuCCGgCAg -3'
miRNA:   3'- aaGACGACGCcgCAGGUCCuGGUgGU- -5'
13952 5' -60.2 NC_003521.1 + 164548 0.73 0.384433
Target:  5'- -gCUGCUGCGGUggcuGUCCAGGAgCGgCGg -3'
miRNA:   3'- aaGACGACGCCG----CAGGUCCUgGUgGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.