miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13952 5' -60.2 NC_003521.1 + 102704 0.69 0.640177
Target:  5'- aUCUGCcgcggccUGCGGCGcgUCuGGAUCGCCGu -3'
miRNA:   3'- aAGACG-------ACGCCGCa-GGuCCUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 119768 0.69 0.641159
Target:  5'- aUCUGCU-CGGCcUCCAGGcugcgguCCACCu -3'
miRNA:   3'- aAGACGAcGCCGcAGGUCCu------GGUGGu -5'
13952 5' -60.2 NC_003521.1 + 227220 0.69 0.641159
Target:  5'- cUCUGCggGCGGCGccgCCAuGGAuuUCGCCGg -3'
miRNA:   3'- aAGACGa-CGCCGCa--GGU-CCU--GGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 218030 0.69 0.641159
Target:  5'- gUUCUuggGCggcgGCGGCGUCCgcagguagaugAGGuCCACCGu -3'
miRNA:   3'- -AAGA---CGa---CGCCGCAGG-----------UCCuGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 62313 0.69 0.650975
Target:  5'- cUUCaugGUUGCGGCGUCCgcGGGACgGgCGa -3'
miRNA:   3'- -AAGa--CGACGCCGCAGG--UCCUGgUgGU- -5'
13952 5' -60.2 NC_003521.1 + 131222 0.68 0.660779
Target:  5'- ---cGUgacggGCGGCGg-CGGGGCCACCAg -3'
miRNA:   3'- aagaCGa----CGCCGCagGUCCUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 169705 0.68 0.660779
Target:  5'- aUCUGCauagucGUGGCGUUCAGGugCGuCCc -3'
miRNA:   3'- aAGACGa-----CGCCGCAGGUCCugGU-GGu -5'
13952 5' -60.2 NC_003521.1 + 100437 0.68 0.680313
Target:  5'- ---aGCgGCGGCGcUCgggagCAGGGCCGCCGa -3'
miRNA:   3'- aagaCGaCGCCGC-AG-----GUCCUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 218765 0.68 0.687119
Target:  5'- -cCUGCUGgccUGGUucgccuuucccgacGUCCGGGGCCACUg -3'
miRNA:   3'- aaGACGAC---GCCG--------------CAGGUCCUGGUGGu -5'
13952 5' -60.2 NC_003521.1 + 226636 0.68 0.69003
Target:  5'- -cCUGCgGCGGCGUCa---GCCGCCGc -3'
miRNA:   3'- aaGACGaCGCCGCAGguccUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 122535 0.68 0.699702
Target:  5'- -gUUGCgGCGGCGUCCcuagAGG-UCGCCGc -3'
miRNA:   3'- aaGACGaCGCCGCAGG----UCCuGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 174954 0.68 0.699702
Target:  5'- ---gGCUGCaGUGUCUgaAGGACCugCAu -3'
miRNA:   3'- aagaCGACGcCGCAGG--UCCUGGugGU- -5'
13952 5' -60.2 NC_003521.1 + 172956 0.67 0.71602
Target:  5'- -cCUGCUGaCGGUGuaggaggggguucaUCCGGG-CCGCCu -3'
miRNA:   3'- aaGACGAC-GCCGC--------------AGGUCCuGGUGGu -5'
13952 5' -60.2 NC_003521.1 + 43713 0.67 0.718881
Target:  5'- ---cGCUGUGaGaguUCCAGGGCCGCCGc -3'
miRNA:   3'- aagaCGACGC-Cgc-AGGUCCUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 76253 0.67 0.718881
Target:  5'- --gUGCUGaCGGCGcCCggcgAGGGCCGCUc -3'
miRNA:   3'- aagACGAC-GCCGCaGG----UCCUGGUGGu -5'
13952 5' -60.2 NC_003521.1 + 181229 0.67 0.718881
Target:  5'- ---aGCUGCaGGUGgagaUCCAGGACC-CCGc -3'
miRNA:   3'- aagaCGACG-CCGC----AGGUCCUGGuGGU- -5'
13952 5' -60.2 NC_003521.1 + 164795 0.67 0.718881
Target:  5'- -gCUGCUGCGa-GUCCGGGuCCGgCAg -3'
miRNA:   3'- aaGACGACGCcgCAGGUCCuGGUgGU- -5'
13952 5' -60.2 NC_003521.1 + 223775 0.67 0.728372
Target:  5'- ---cGCUGuCGGCG-CCGuuaccgccguGGGCCGCCAg -3'
miRNA:   3'- aagaCGAC-GCCGCaGGU----------CCUGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 73072 0.67 0.737787
Target:  5'- -gCUGCUGCugguggugguaGGCGUgCGGGucuuggagcuguGCCGCCGa -3'
miRNA:   3'- aaGACGACG-----------CCGCAgGUCC------------UGGUGGU- -5'
13952 5' -60.2 NC_003521.1 + 112374 0.67 0.737787
Target:  5'- ---gGCUGCGGCGUCUcGu-CCACCu -3'
miRNA:   3'- aagaCGACGCCGCAGGuCcuGGUGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.