miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13954 3' -53.3 NC_003521.1 + 240999 0.68 0.976694
Target:  5'- gCCgGCCGGUcggacguguuUCGggccggCGGGUCGUCGCgGg -3'
miRNA:   3'- -GG-CGGCUA----------AGUa-----GCCUAGCAGCGaCa -5'
13954 3' -53.3 NC_003521.1 + 239527 0.66 0.994505
Target:  5'- gCGCCGuagcggaaccAUUCGUCGG--CGUCGCgGg -3'
miRNA:   3'- gGCGGC----------UAAGUAGCCuaGCAGCGaCa -5'
13954 3' -53.3 NC_003521.1 + 237329 0.66 0.992769
Target:  5'- aCCGCCGcAUgc-UCGGAcacaugcgUCGUCGCg-- -3'
miRNA:   3'- -GGCGGC-UAaguAGCCU--------AGCAGCGaca -5'
13954 3' -53.3 NC_003521.1 + 233361 0.68 0.976694
Target:  5'- cCUGCUGGaUCcgCGGAUgCGUCGCcGg -3'
miRNA:   3'- -GGCGGCUaAGuaGCCUA-GCAGCGaCa -5'
13954 3' -53.3 NC_003521.1 + 231428 0.68 0.978981
Target:  5'- aUCGCCGGagCAgCGGAUCuGUCGCc-- -3'
miRNA:   3'- -GGCGGCUaaGUaGCCUAG-CAGCGaca -5'
13954 3' -53.3 NC_003521.1 + 213250 0.67 0.984846
Target:  5'- gCCGCgGAccaCGUCGGAggcggguaguUCGUCGCg-- -3'
miRNA:   3'- -GGCGgCUaa-GUAGCCU----------AGCAGCGaca -5'
13954 3' -53.3 NC_003521.1 + 210920 0.66 0.993685
Target:  5'- aCgGCCacGggUCGUCGGucGUCGUCGCccagGUg -3'
miRNA:   3'- -GgCGG--CuaAGUAGCC--UAGCAGCGa---CA- -5'
13954 3' -53.3 NC_003521.1 + 204557 0.66 0.995237
Target:  5'- cCCGCCGG-UCGUCGGcaugccggucauGUCGagCGCcGUc -3'
miRNA:   3'- -GGCGGCUaAGUAGCC------------UAGCa-GCGaCA- -5'
13954 3' -53.3 NC_003521.1 + 201788 0.66 0.994505
Target:  5'- gCGCCGuagcggaaccAUUCGUCGG--CGUCGCgGg -3'
miRNA:   3'- gGCGGC----------UAAGUAGCCuaGCAGCGaCa -5'
13954 3' -53.3 NC_003521.1 + 200317 0.68 0.976694
Target:  5'- gCCgGCCGGUcggacguguuUCGggccggCGGGUCGUCGCgGg -3'
miRNA:   3'- -GG-CGGCUA----------AGUa-----GCCUAGCAGCGaCa -5'
13954 3' -53.3 NC_003521.1 + 196973 0.77 0.620702
Target:  5'- gCCGCCGGUgaaGUCGGc-CGUCGCUGc -3'
miRNA:   3'- -GGCGGCUAag-UAGCCuaGCAGCGACa -5'
13954 3' -53.3 NC_003521.1 + 196895 0.69 0.965708
Target:  5'- -gGCCGGggCGgaaggCGGGUCGUCGUUcGUa -3'
miRNA:   3'- ggCGGCUaaGUa----GCCUAGCAGCGA-CA- -5'
13954 3' -53.3 NC_003521.1 + 195499 0.67 0.986494
Target:  5'- cUCG-UGAUcaucaUCAUCGGcgUGUCGCUGg -3'
miRNA:   3'- -GGCgGCUA-----AGUAGCCuaGCAGCGACa -5'
13954 3' -53.3 NC_003521.1 + 192681 0.66 0.992769
Target:  5'- cUCGCCGAUguaCA-CGGAggugcacaggUCGUCGCg-- -3'
miRNA:   3'- -GGCGGCUAa--GUaGCCU----------AGCAGCGaca -5'
13954 3' -53.3 NC_003521.1 + 192290 0.67 0.989374
Target:  5'- aCGCCG-UUCGUCGGcacCGUcCGCgGUa -3'
miRNA:   3'- gGCGGCuAAGUAGCCua-GCA-GCGaCA- -5'
13954 3' -53.3 NC_003521.1 + 187766 0.77 0.660555
Target:  5'- -aGCCGucUCGUCGGAUCGUCGUg-- -3'
miRNA:   3'- ggCGGCuaAGUAGCCUAGCAGCGaca -5'
13954 3' -53.3 NC_003521.1 + 167086 0.66 0.990621
Target:  5'- aCCGUCG--UCGccUGGAUCGUCGCa-- -3'
miRNA:   3'- -GGCGGCuaAGUa-GCCUAGCAGCGaca -5'
13954 3' -53.3 NC_003521.1 + 164652 0.69 0.965708
Target:  5'- gCGaCCGuugUCGUUGGGguuacCGUCGCUGg -3'
miRNA:   3'- gGC-GGCua-AGUAGCCUa----GCAGCGACa -5'
13954 3' -53.3 NC_003521.1 + 162298 0.71 0.918185
Target:  5'- aCGCCGGgagUCcgCGGAauccgCGUCGCgUGUc -3'
miRNA:   3'- gGCGGCUa--AGuaGCCUa----GCAGCG-ACA- -5'
13954 3' -53.3 NC_003521.1 + 160286 0.7 0.928834
Target:  5'- -aGCCGucgUCGUCGuacucGUCGUCGCUGc -3'
miRNA:   3'- ggCGGCua-AGUAGCc----UAGCAGCGACa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.