Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13954 | 3' | -53.3 | NC_003521.1 | + | 143151 | 0.66 | 0.99175 |
Target: 5'- gCGCCGcucucCAagGGAUCGcCGCUGc -3' miRNA: 3'- gGCGGCuaa--GUagCCUAGCaGCGACa -5' |
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13954 | 3' | -53.3 | NC_003521.1 | + | 142903 | 0.68 | 0.971581 |
Target: 5'- aCCGCUGAggCcgCGGuucuccUUGUUGCUGUc -3' miRNA: 3'- -GGCGGCUaaGuaGCCu-----AGCAGCGACA- -5' |
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13954 | 3' | -53.3 | NC_003521.1 | + | 137071 | 0.66 | 0.994505 |
Target: 5'- aCGCCGGggUCGUCGGcgggcagCGUgaccgugagccCGCUGUc -3' miRNA: 3'- gGCGGCUa-AGUAGCCua-----GCA-----------GCGACA- -5' |
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13954 | 3' | -53.3 | NC_003521.1 | + | 123558 | 0.68 | 0.978981 |
Target: 5'- aCGCCGAgUCGcccgCGGAccugacgcugUCGUCGCUc- -3' miRNA: 3'- gGCGGCUaAGUa---GCCU----------AGCAGCGAca -5' |
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13954 | 3' | -53.3 | NC_003521.1 | + | 116711 | 0.67 | 0.984846 |
Target: 5'- aCgGCCGcgUCGUCGuGGUUGaCGUUGa -3' miRNA: 3'- -GgCGGCuaAGUAGC-CUAGCaGCGACa -5' |
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13954 | 3' | -53.3 | NC_003521.1 | + | 116223 | 0.68 | 0.97423 |
Target: 5'- gCCGCCGcUUCGUCGuccUCGUCggccaucgGCUGUc -3' miRNA: 3'- -GGCGGCuAAGUAGCcu-AGCAG--------CGACA- -5' |
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13954 | 3' | -53.3 | NC_003521.1 | + | 110370 | 0.67 | 0.98305 |
Target: 5'- gCGCUGGcgCGUCGucGAUCGUCGCccGUa -3' miRNA: 3'- gGCGGCUaaGUAGC--CUAGCAGCGa-CA- -5' |
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13954 | 3' | -53.3 | NC_003521.1 | + | 105194 | 0.66 | 0.994505 |
Target: 5'- cCCGCCGA-UCGUgGGAUCcgcccgcgaGCUGc -3' miRNA: 3'- -GGCGGCUaAGUAgCCUAGcag------CGACa -5' |
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13954 | 3' | -53.3 | NC_003521.1 | + | 100816 | 0.72 | 0.892894 |
Target: 5'- aCGCCGAgggcgaguaucgUCGUCGGAUCcccaGCUGUc -3' miRNA: 3'- gGCGGCUa-----------AGUAGCCUAGcag-CGACA- -5' |
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13954 | 3' | -53.3 | NC_003521.1 | + | 89999 | 0.76 | 0.680382 |
Target: 5'- aCCGCCGAccCcUCGGGUCGggcCGCUGg -3' miRNA: 3'- -GGCGGCUaaGuAGCCUAGCa--GCGACa -5' |
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13954 | 3' | -53.3 | NC_003521.1 | + | 86446 | 0.66 | 0.992769 |
Target: 5'- aCGUCGAUgagGUCGuGAUCGuuguagUCGCUGg -3' miRNA: 3'- gGCGGCUAag-UAGC-CUAGC------AGCGACa -5' |
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13954 | 3' | -53.3 | NC_003521.1 | + | 83019 | 0.66 | 0.99342 |
Target: 5'- cCCGCCGGUcgcgcgugaucUCGUcccgcaagCGGAcccgcaacgcagccUCGUUGCUGg -3' miRNA: 3'- -GGCGGCUA-----------AGUA--------GCCU--------------AGCAGCGACa -5' |
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13954 | 3' | -53.3 | NC_003521.1 | + | 82527 | 0.66 | 0.994505 |
Target: 5'- cCUGCUGAgUCGUcCGGGUgGUCGUa-- -3' miRNA: 3'- -GGCGGCUaAGUA-GCCUAgCAGCGaca -5' |
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13954 | 3' | -53.3 | NC_003521.1 | + | 74143 | 0.66 | 0.993685 |
Target: 5'- uUGCgGAUcUCGggCGGGgggaggcucUCGUCGCUGUg -3' miRNA: 3'- gGCGgCUA-AGUa-GCCU---------AGCAGCGACA- -5' |
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13954 | 3' | -53.3 | NC_003521.1 | + | 71627 | 0.67 | 0.989374 |
Target: 5'- gCgGCgGGUUCGUCGccaggcgcGUCGUCGUUGg -3' miRNA: 3'- -GgCGgCUAAGUAGCc-------UAGCAGCGACa -5' |
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13954 | 3' | -53.3 | NC_003521.1 | + | 71520 | 0.67 | 0.98305 |
Target: 5'- uCCGCCGAUguuggCgGGAUCGUggcgucugUGCUGUc -3' miRNA: 3'- -GGCGGCUAagua-G-CCUAGCA--------GCGACA- -5' |
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13954 | 3' | -53.3 | NC_003521.1 | + | 58035 | 0.68 | 0.981097 |
Target: 5'- aCGgCGAUU-GUgGGAUCGUCGCcGUc -3' miRNA: 3'- gGCgGCUAAgUAgCCUAGCAGCGaCA- -5' |
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13954 | 3' | -53.3 | NC_003521.1 | + | 43238 | 0.67 | 0.984846 |
Target: 5'- gUCGUCGGUgggCGccggCGGGUCGcgcUCGCUGg -3' miRNA: 3'- -GGCGGCUAa--GUa---GCCUAGC---AGCGACa -5' |
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13954 | 3' | -53.3 | NC_003521.1 | + | 31363 | 0.66 | 0.993685 |
Target: 5'- gCGCCGcgUgUAcCGGccgccgccGUCGUCGCUGUu -3' miRNA: 3'- gGCGGCuaA-GUaGCC--------UAGCAGCGACA- -5' |
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13954 | 3' | -53.3 | NC_003521.1 | + | 30596 | 0.69 | 0.962471 |
Target: 5'- gCCGCCGAcUCGcUGGcgCaGUUGCUGg -3' miRNA: 3'- -GGCGGCUaAGUaGCCuaG-CAGCGACa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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