miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13954 3' -53.3 NC_003521.1 + 231428 0.68 0.978981
Target:  5'- aUCGCCGGagCAgCGGAUCuGUCGCc-- -3'
miRNA:   3'- -GGCGGCUaaGUaGCCUAG-CAGCGaca -5'
13954 3' -53.3 NC_003521.1 + 123558 0.68 0.978981
Target:  5'- aCGCCGAgUCGcccgCGGAccugacgcugUCGUCGCUc- -3'
miRNA:   3'- gGCGGCUaAGUa---GCCU----------AGCAGCGAca -5'
13954 3' -53.3 NC_003521.1 + 58035 0.68 0.981097
Target:  5'- aCGgCGAUU-GUgGGAUCGUCGCcGUc -3'
miRNA:   3'- gGCgGCUAAgUAgCCUAGCAGCGaCA- -5'
13954 3' -53.3 NC_003521.1 + 110370 0.67 0.98305
Target:  5'- gCGCUGGcgCGUCGucGAUCGUCGCccGUa -3'
miRNA:   3'- gGCGGCUaaGUAGC--CUAGCAGCGa-CA- -5'
13954 3' -53.3 NC_003521.1 + 71520 0.67 0.98305
Target:  5'- uCCGCCGAUguuggCgGGAUCGUggcgucugUGCUGUc -3'
miRNA:   3'- -GGCGGCUAagua-G-CCUAGCA--------GCGACA- -5'
13954 3' -53.3 NC_003521.1 + 43238 0.67 0.984846
Target:  5'- gUCGUCGGUgggCGccggCGGGUCGcgcUCGCUGg -3'
miRNA:   3'- -GGCGGCUAa--GUa---GCCUAGC---AGCGACa -5'
13954 3' -53.3 NC_003521.1 + 116711 0.67 0.984846
Target:  5'- aCgGCCGcgUCGUCGuGGUUGaCGUUGa -3'
miRNA:   3'- -GgCGGCuaAGUAGC-CUAGCaGCGACa -5'
13954 3' -53.3 NC_003521.1 + 213250 0.67 0.984846
Target:  5'- gCCGCgGAccaCGUCGGAggcggguaguUCGUCGCg-- -3'
miRNA:   3'- -GGCGgCUaa-GUAGCCU----------AGCAGCGaca -5'
13954 3' -53.3 NC_003521.1 + 5554 0.67 0.986494
Target:  5'- gCCGCCGccaUCGUUGuuccGUcCGUCGCUGUc -3'
miRNA:   3'- -GGCGGCua-AGUAGCc---UA-GCAGCGACA- -5'
13954 3' -53.3 NC_003521.1 + 195499 0.67 0.986494
Target:  5'- cUCG-UGAUcaucaUCAUCGGcgUGUCGCUGg -3'
miRNA:   3'- -GGCgGCUA-----AGUAGCCuaGCAGCGACa -5'
13954 3' -53.3 NC_003521.1 + 71627 0.67 0.989374
Target:  5'- gCgGCgGGUUCGUCGccaggcgcGUCGUCGUUGg -3'
miRNA:   3'- -GgCGgCUAAGUAGCc-------UAGCAGCGACa -5'
13954 3' -53.3 NC_003521.1 + 192290 0.67 0.989374
Target:  5'- aCGCCG-UUCGUCGGcacCGUcCGCgGUa -3'
miRNA:   3'- gGCGGCuAAGUAGCCua-GCA-GCGaCA- -5'
13954 3' -53.3 NC_003521.1 + 167086 0.66 0.990621
Target:  5'- aCCGUCG--UCGccUGGAUCGUCGCa-- -3'
miRNA:   3'- -GGCGGCuaAGUa-GCCUAGCAGCGaca -5'
13954 3' -53.3 NC_003521.1 + 143151 0.66 0.99175
Target:  5'- gCGCCGcucucCAagGGAUCGcCGCUGc -3'
miRNA:   3'- gGCGGCuaa--GUagCCUAGCaGCGACa -5'
13954 3' -53.3 NC_003521.1 + 16945 0.66 0.99175
Target:  5'- aCCGCCGuuacCGUCGGGga-UUGCUGg -3'
miRNA:   3'- -GGCGGCuaa-GUAGCCUagcAGCGACa -5'
13954 3' -53.3 NC_003521.1 + 237329 0.66 0.992769
Target:  5'- aCCGCCGcAUgc-UCGGAcacaugcgUCGUCGCg-- -3'
miRNA:   3'- -GGCGGC-UAaguAGCCU--------AGCAGCGaca -5'
13954 3' -53.3 NC_003521.1 + 192681 0.66 0.992769
Target:  5'- cUCGCCGAUguaCA-CGGAggugcacaggUCGUCGCg-- -3'
miRNA:   3'- -GGCGGCUAa--GUaGCCU----------AGCAGCGaca -5'
13954 3' -53.3 NC_003521.1 + 86446 0.66 0.992769
Target:  5'- aCGUCGAUgagGUCGuGAUCGuuguagUCGCUGg -3'
miRNA:   3'- gGCGGCUAag-UAGC-CUAGC------AGCGACa -5'
13954 3' -53.3 NC_003521.1 + 83019 0.66 0.99342
Target:  5'- cCCGCCGGUcgcgcgugaucUCGUcccgcaagCGGAcccgcaacgcagccUCGUUGCUGg -3'
miRNA:   3'- -GGCGGCUA-----------AGUA--------GCCU--------------AGCAGCGACa -5'
13954 3' -53.3 NC_003521.1 + 210920 0.66 0.993685
Target:  5'- aCgGCCacGggUCGUCGGucGUCGUCGCccagGUg -3'
miRNA:   3'- -GgCGG--CuaAGUAGCC--UAGCAGCGa---CA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.