miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13954 3' -53.3 NC_003521.1 + 105194 0.66 0.994505
Target:  5'- cCCGCCGA-UCGUgGGAUCcgcccgcgaGCUGc -3'
miRNA:   3'- -GGCGGCUaAGUAgCCUAGcag------CGACa -5'
13954 3' -53.3 NC_003521.1 + 110370 0.67 0.98305
Target:  5'- gCGCUGGcgCGUCGucGAUCGUCGCccGUa -3'
miRNA:   3'- gGCGGCUaaGUAGC--CUAGCAGCGa-CA- -5'
13954 3' -53.3 NC_003521.1 + 116223 0.68 0.97423
Target:  5'- gCCGCCGcUUCGUCGuccUCGUCggccaucgGCUGUc -3'
miRNA:   3'- -GGCGGCuAAGUAGCcu-AGCAG--------CGACA- -5'
13954 3' -53.3 NC_003521.1 + 116711 0.67 0.984846
Target:  5'- aCgGCCGcgUCGUCGuGGUUGaCGUUGa -3'
miRNA:   3'- -GgCGGCuaAGUAGC-CUAGCaGCGACa -5'
13954 3' -53.3 NC_003521.1 + 123558 0.68 0.978981
Target:  5'- aCGCCGAgUCGcccgCGGAccugacgcugUCGUCGCUc- -3'
miRNA:   3'- gGCGGCUaAGUa---GCCU----------AGCAGCGAca -5'
13954 3' -53.3 NC_003521.1 + 137071 0.66 0.994505
Target:  5'- aCGCCGGggUCGUCGGcgggcagCGUgaccgugagccCGCUGUc -3'
miRNA:   3'- gGCGGCUa-AGUAGCCua-----GCA-----------GCGACA- -5'
13954 3' -53.3 NC_003521.1 + 142903 0.68 0.971581
Target:  5'- aCCGCUGAggCcgCGGuucuccUUGUUGCUGUc -3'
miRNA:   3'- -GGCGGCUaaGuaGCCu-----AGCAGCGACA- -5'
13954 3' -53.3 NC_003521.1 + 143151 0.66 0.99175
Target:  5'- gCGCCGcucucCAagGGAUCGcCGCUGc -3'
miRNA:   3'- gGCGGCuaa--GUagCCUAGCaGCGACa -5'
13954 3' -53.3 NC_003521.1 + 160286 0.7 0.928834
Target:  5'- -aGCCGucgUCGUCGuacucGUCGUCGCUGc -3'
miRNA:   3'- ggCGGCua-AGUAGCc----UAGCAGCGACa -5'
13954 3' -53.3 NC_003521.1 + 162298 0.71 0.918185
Target:  5'- aCGCCGGgagUCcgCGGAauccgCGUCGCgUGUc -3'
miRNA:   3'- gGCGGCUa--AGuaGCCUa----GCAGCG-ACA- -5'
13954 3' -53.3 NC_003521.1 + 164652 0.69 0.965708
Target:  5'- gCGaCCGuugUCGUUGGGguuacCGUCGCUGg -3'
miRNA:   3'- gGC-GGCua-AGUAGCCUa----GCAGCGACa -5'
13954 3' -53.3 NC_003521.1 + 167086 0.66 0.990621
Target:  5'- aCCGUCG--UCGccUGGAUCGUCGCa-- -3'
miRNA:   3'- -GGCGGCuaAGUa-GCCUAGCAGCGaca -5'
13954 3' -53.3 NC_003521.1 + 187766 0.77 0.660555
Target:  5'- -aGCCGucUCGUCGGAUCGUCGUg-- -3'
miRNA:   3'- ggCGGCuaAGUAGCCUAGCAGCGaca -5'
13954 3' -53.3 NC_003521.1 + 192290 0.67 0.989374
Target:  5'- aCGCCG-UUCGUCGGcacCGUcCGCgGUa -3'
miRNA:   3'- gGCGGCuAAGUAGCCua-GCA-GCGaCA- -5'
13954 3' -53.3 NC_003521.1 + 192681 0.66 0.992769
Target:  5'- cUCGCCGAUguaCA-CGGAggugcacaggUCGUCGCg-- -3'
miRNA:   3'- -GGCGGCUAa--GUaGCCU----------AGCAGCGaca -5'
13954 3' -53.3 NC_003521.1 + 195499 0.67 0.986494
Target:  5'- cUCG-UGAUcaucaUCAUCGGcgUGUCGCUGg -3'
miRNA:   3'- -GGCgGCUA-----AGUAGCCuaGCAGCGACa -5'
13954 3' -53.3 NC_003521.1 + 196895 0.69 0.965708
Target:  5'- -gGCCGGggCGgaaggCGGGUCGUCGUUcGUa -3'
miRNA:   3'- ggCGGCUaaGUa----GCCUAGCAGCGA-CA- -5'
13954 3' -53.3 NC_003521.1 + 196973 0.77 0.620702
Target:  5'- gCCGCCGGUgaaGUCGGc-CGUCGCUGc -3'
miRNA:   3'- -GGCGGCUAag-UAGCCuaGCAGCGACa -5'
13954 3' -53.3 NC_003521.1 + 200317 0.68 0.976694
Target:  5'- gCCgGCCGGUcggacguguuUCGggccggCGGGUCGUCGCgGg -3'
miRNA:   3'- -GG-CGGCUA----------AGUa-----GCCUAGCAGCGaCa -5'
13954 3' -53.3 NC_003521.1 + 201788 0.66 0.994505
Target:  5'- gCGCCGuagcggaaccAUUCGUCGG--CGUCGCgGg -3'
miRNA:   3'- gGCGGC----------UAAGUAGCCuaGCAGCGaCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.