Results 21 - 40 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13954 | 3' | -53.3 | NC_003521.1 | + | 110370 | 0.67 | 0.98305 |
Target: 5'- gCGCUGGcgCGUCGucGAUCGUCGCccGUa -3' miRNA: 3'- gGCGGCUaaGUAGC--CUAGCAGCGa-CA- -5' |
|||||||
13954 | 3' | -53.3 | NC_003521.1 | + | 213250 | 0.67 | 0.984846 |
Target: 5'- gCCGCgGAccaCGUCGGAggcggguaguUCGUCGCg-- -3' miRNA: 3'- -GGCGgCUaa-GUAGCCU----------AGCAGCGaca -5' |
|||||||
13954 | 3' | -53.3 | NC_003521.1 | + | 195499 | 0.67 | 0.986494 |
Target: 5'- cUCG-UGAUcaucaUCAUCGGcgUGUCGCUGg -3' miRNA: 3'- -GGCgGCUA-----AGUAGCCuaGCAGCGACa -5' |
|||||||
13954 | 3' | -53.3 | NC_003521.1 | + | 5554 | 0.67 | 0.986494 |
Target: 5'- gCCGCCGccaUCGUUGuuccGUcCGUCGCUGUc -3' miRNA: 3'- -GGCGGCua-AGUAGCc---UA-GCAGCGACA- -5' |
|||||||
13954 | 3' | -53.3 | NC_003521.1 | + | 192290 | 0.67 | 0.989374 |
Target: 5'- aCGCCG-UUCGUCGGcacCGUcCGCgGUa -3' miRNA: 3'- gGCGGCuAAGUAGCCua-GCA-GCGaCA- -5' |
|||||||
13954 | 3' | -53.3 | NC_003521.1 | + | 233361 | 0.68 | 0.976694 |
Target: 5'- cCUGCUGGaUCcgCGGAUgCGUCGCcGg -3' miRNA: 3'- -GGCGGCUaAGuaGCCUA-GCAGCGaCa -5' |
|||||||
13954 | 3' | -53.3 | NC_003521.1 | + | 200317 | 0.68 | 0.976694 |
Target: 5'- gCCgGCCGGUcggacguguuUCGggccggCGGGUCGUCGCgGg -3' miRNA: 3'- -GG-CGGCUA----------AGUa-----GCCUAGCAGCGaCa -5' |
|||||||
13954 | 3' | -53.3 | NC_003521.1 | + | 116223 | 0.68 | 0.97423 |
Target: 5'- gCCGCCGcUUCGUCGuccUCGUCggccaucgGCUGUc -3' miRNA: 3'- -GGCGGCuAAGUAGCcu-AGCAG--------CGACA- -5' |
|||||||
13954 | 3' | -53.3 | NC_003521.1 | + | 142903 | 0.68 | 0.971581 |
Target: 5'- aCCGCUGAggCcgCGGuucuccUUGUUGCUGUc -3' miRNA: 3'- -GGCGGCUaaGuaGCCu-----AGCAGCGACA- -5' |
|||||||
13954 | 3' | -53.3 | NC_003521.1 | + | 240999 | 0.68 | 0.976694 |
Target: 5'- gCCgGCCGGUcggacguguuUCGggccggCGGGUCGUCGCgGg -3' miRNA: 3'- -GG-CGGCUA----------AGUa-----GCCUAGCAGCGaCa -5' |
|||||||
13954 | 3' | -53.3 | NC_003521.1 | + | 450 | 0.68 | 0.976694 |
Target: 5'- gCCgGCCGGUcggacguguuUCGggccggCGGGUCGUCGCgGg -3' miRNA: 3'- -GG-CGGCUA----------AGUa-----GCCUAGCAGCGaCa -5' |
|||||||
13954 | 3' | -53.3 | NC_003521.1 | + | 231428 | 0.68 | 0.978981 |
Target: 5'- aUCGCCGGagCAgCGGAUCuGUCGCc-- -3' miRNA: 3'- -GGCGGCUaaGUaGCCUAG-CAGCGaca -5' |
|||||||
13954 | 3' | -53.3 | NC_003521.1 | + | 123558 | 0.68 | 0.978981 |
Target: 5'- aCGCCGAgUCGcccgCGGAccugacgcugUCGUCGCUc- -3' miRNA: 3'- gGCGGCUaAGUa---GCCU----------AGCAGCGAca -5' |
|||||||
13954 | 3' | -53.3 | NC_003521.1 | + | 58035 | 0.68 | 0.981097 |
Target: 5'- aCGgCGAUU-GUgGGAUCGUCGCcGUc -3' miRNA: 3'- gGCgGCUAAgUAgCCUAGCAGCGaCA- -5' |
|||||||
13954 | 3' | -53.3 | NC_003521.1 | + | 196895 | 0.69 | 0.965708 |
Target: 5'- -gGCCGGggCGgaaggCGGGUCGUCGUUcGUa -3' miRNA: 3'- ggCGGCUaaGUa----GCCUAGCAGCGA-CA- -5' |
|||||||
13954 | 3' | -53.3 | NC_003521.1 | + | 30596 | 0.69 | 0.962471 |
Target: 5'- gCCGCCGAcUCGcUGGcgCaGUUGCUGg -3' miRNA: 3'- -GGCGGCUaAGUaGCCuaG-CAGCGACa -5' |
|||||||
13954 | 3' | -53.3 | NC_003521.1 | + | 164652 | 0.69 | 0.965708 |
Target: 5'- gCGaCCGuugUCGUUGGGguuacCGUCGCUGg -3' miRNA: 3'- gGC-GGCua-AGUAGCCUa----GCAGCGACa -5' |
|||||||
13954 | 3' | -53.3 | NC_003521.1 | + | 1790 | 0.69 | 0.951105 |
Target: 5'- aCCGCCauccccuGAggCGuUCGuGGUCGUUGCUGUg -3' miRNA: 3'- -GGCGG-------CUaaGU-AGC-CUAGCAGCGACA- -5' |
|||||||
13954 | 3' | -53.3 | NC_003521.1 | + | 20625 | 0.7 | 0.943108 |
Target: 5'- aCGCCGAggaccucgUCGUCGGAcaCGUUGgaGUa -3' miRNA: 3'- gGCGGCUa-------AGUAGCCUa-GCAGCgaCA- -5' |
|||||||
13954 | 3' | -53.3 | NC_003521.1 | + | 15459 | 0.7 | 0.938575 |
Target: 5'- uCCGCCGAUUCGUCuaacuuucccuuGGAauuUCGUgGCg-- -3' miRNA: 3'- -GGCGGCUAAGUAG------------CCU---AGCAgCGaca -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home