miRNA display CGI


Results 41 - 48 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13954 3' -53.3 NC_003521.1 + 74143 0.66 0.993685
Target:  5'- uUGCgGAUcUCGggCGGGgggaggcucUCGUCGCUGUg -3'
miRNA:   3'- gGCGgCUA-AGUa-GCCU---------AGCAGCGACA- -5'
13954 3' -53.3 NC_003521.1 + 31363 0.66 0.993685
Target:  5'- gCGCCGcgUgUAcCGGccgccgccGUCGUCGCUGUu -3'
miRNA:   3'- gGCGGCuaA-GUaGCC--------UAGCAGCGACA- -5'
13954 3' -53.3 NC_003521.1 + 105194 0.66 0.994505
Target:  5'- cCCGCCGA-UCGUgGGAUCcgcccgcgaGCUGc -3'
miRNA:   3'- -GGCGGCUaAGUAgCCUAGcag------CGACa -5'
13954 3' -53.3 NC_003521.1 + 82527 0.66 0.994505
Target:  5'- cCUGCUGAgUCGUcCGGGUgGUCGUa-- -3'
miRNA:   3'- -GGCGGCUaAGUA-GCCUAgCAGCGaca -5'
13954 3' -53.3 NC_003521.1 + 239527 0.66 0.994505
Target:  5'- gCGCCGuagcggaaccAUUCGUCGG--CGUCGCgGg -3'
miRNA:   3'- gGCGGC----------UAAGUAGCCuaGCAGCGaCa -5'
13954 3' -53.3 NC_003521.1 + 201788 0.66 0.994505
Target:  5'- gCGCCGuagcggaaccAUUCGUCGG--CGUCGCgGg -3'
miRNA:   3'- gGCGGC----------UAAGUAGCCuaGCAGCGaCa -5'
13954 3' -53.3 NC_003521.1 + 137071 0.66 0.994505
Target:  5'- aCGCCGGggUCGUCGGcgggcagCGUgaccgugagccCGCUGUc -3'
miRNA:   3'- gGCGGCUa-AGUAGCCua-----GCA-----------GCGACA- -5'
13954 3' -53.3 NC_003521.1 + 204557 0.66 0.995237
Target:  5'- cCCGCCGG-UCGUCGGcaugccggucauGUCGagCGCcGUc -3'
miRNA:   3'- -GGCGGCUaAGUAGCC------------UAGCa-GCGaCA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.