miRNA display CGI


Results 81 - 100 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13954 5' -52.2 NC_003521.1 + 49088 0.7 0.962095
Target:  5'- cGGACG-GGggGCGAUAUCcacaaagugcgcguGGUG-ACCg -3'
miRNA:   3'- -CCUGCuCCuuCGCUAUGG--------------CUACcUGG- -5'
13954 5' -52.2 NC_003521.1 + 134506 0.7 0.959681
Target:  5'- cGGAUGAGGcAGGCGAUGCgcac-GGCCg -3'
miRNA:   3'- -CCUGCUCC-UUCGCUAUGgcuacCUGG- -5'
13954 5' -52.2 NC_003521.1 + 217272 0.7 0.958615
Target:  5'- cGGACGAGGAgcaGGCGcugGCCaccaccaccgacagGGUGGugACCa -3'
miRNA:   3'- -CCUGCUCCU---UCGCua-UGG--------------CUACC--UGG- -5'
13954 5' -52.2 NC_003521.1 + 32005 0.7 0.959681
Target:  5'- cGGuCGAGGcGGCGGaGgCGGUGG-CCg -3'
miRNA:   3'- -CCuGCUCCuUCGCUaUgGCUACCuGG- -5'
13954 5' -52.2 NC_003521.1 + 55360 0.7 0.959681
Target:  5'- cGGGUGcGGAGGUGAUcGCCGAgcgGGugCg -3'
miRNA:   3'- -CCUGCuCCUUCGCUA-UGGCUa--CCugG- -5'
13954 5' -52.2 NC_003521.1 + 203668 0.7 0.972125
Target:  5'- cGACGgccuGGGAGGCGugGCCG--GGACCu -3'
miRNA:   3'- cCUGC----UCCUUCGCuaUGGCuaCCUGG- -5'
13954 5' -52.2 NC_003521.1 + 142124 0.7 0.972125
Target:  5'- uGGugGcuGGuGAGGCGGUGCCGGga-GCCg -3'
miRNA:   3'- -CCugC--UC-CUUCGCUAUGGCUaccUGG- -5'
13954 5' -52.2 NC_003521.1 + 147118 0.7 0.972125
Target:  5'- uGGGCGGGaGggGCGGaGgCGA-GGACg -3'
miRNA:   3'- -CCUGCUC-CuuCGCUaUgGCUaCCUGg -5'
13954 5' -52.2 NC_003521.1 + 178023 0.7 0.972125
Target:  5'- uGGGCGccacGGGcAGCGuaccGUACCGcUGGAUCa -3'
miRNA:   3'- -CCUGC----UCCuUCGC----UAUGGCuACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 121291 0.7 0.971852
Target:  5'- cGACGAGGucGGCGccGCCGAggaggucUGGAgCa -3'
miRNA:   3'- cCUGCUCCu-UCGCuaUGGCU-------ACCUgG- -5'
13954 5' -52.2 NC_003521.1 + 17152 0.7 0.969314
Target:  5'- cGGcCGAGGggGuCGAggcgGCCGcgGGGa- -3'
miRNA:   3'- -CCuGCUCCuuC-GCUa---UGGCuaCCUgg -5'
13954 5' -52.2 NC_003521.1 + 186931 0.7 0.969314
Target:  5'- aGGACGAGGA----GUGCUGG-GGGCCc -3'
miRNA:   3'- -CCUGCUCCUucgcUAUGGCUaCCUGG- -5'
13954 5' -52.2 NC_003521.1 + 119242 0.7 0.969314
Target:  5'- aGGAgGAGGAGuCGGacACCGAggagGGACUg -3'
miRNA:   3'- -CCUgCUCCUUcGCUa-UGGCUa---CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 74863 0.7 0.963098
Target:  5'- cGGCGAGGc-GCGccgGCCGcgGGACg -3'
miRNA:   3'- cCUGCUCCuuCGCua-UGGCuaCCUGg -5'
13954 5' -52.2 NC_003521.1 + 28270 0.7 0.965366
Target:  5'- uGGAgGAGGAcAGCGAggUGCCGcucacgcugccgccGUGG-CCg -3'
miRNA:   3'- -CCUgCUCCU-UCGCU--AUGGC--------------UACCuGG- -5'
13954 5' -52.2 NC_003521.1 + 127395 0.7 0.966307
Target:  5'- cGGGCuGGGAcucaaccucaAGaCGcUGCUGGUGGACCu -3'
miRNA:   3'- -CCUGcUCCU----------UC-GCuAUGGCUACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 121243 0.7 0.966307
Target:  5'- cGACGAGGA--CGA-GCUGgcGGACCg -3'
miRNA:   3'- cCUGCUCCUucGCUaUGGCuaCCUGG- -5'
13954 5' -52.2 NC_003521.1 + 125793 0.7 0.967534
Target:  5'- uGACGcAGGAAGCGcUGCCGAuccUcagcaccacgacgcuGGGCCu -3'
miRNA:   3'- cCUGC-UCCUUCGCuAUGGCU---A---------------CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 117867 0.69 0.983268
Target:  5'- aGGACGGGGGcGGCGGUA--GGUGGucguagcGCCg -3'
miRNA:   3'- -CCUGCUCCU-UCGCUAUggCUACC-------UGG- -5'
13954 5' -52.2 NC_003521.1 + 197987 0.69 0.981528
Target:  5'- -aGCGGGGAuguuGUGGUGgUGGUGGGCg -3'
miRNA:   3'- ccUGCUCCUu---CGCUAUgGCUACCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.