miRNA display CGI


Results 61 - 80 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13954 5' -52.2 NC_003521.1 + 170176 0.71 0.93935
Target:  5'- uGGuCGAcuucGGAgcGGUGGUGCCGGUGGAg- -3'
miRNA:   3'- -CCuGCU----CCU--UCGCUAUGGCUACCUgg -5'
13954 5' -52.2 NC_003521.1 + 131104 0.71 0.93935
Target:  5'- cGGACGGcGggGCGGcgcggcUGCCGGgaagGGACa -3'
miRNA:   3'- -CCUGCUcCuuCGCU------AUGGCUa---CCUGg -5'
13954 5' -52.2 NC_003521.1 + 75833 0.71 0.956053
Target:  5'- aGGACGAGGAcaggagggcgcuGGCGuagccGCCGccGGcGCCg -3'
miRNA:   3'- -CCUGCUCCU------------UCGCua---UGGCuaCC-UGG- -5'
13954 5' -52.2 NC_003521.1 + 76895 0.71 0.93935
Target:  5'- aGGA-GAGGAGGCGGaACgGcgGGGCg -3'
miRNA:   3'- -CCUgCUCCUUCGCUaUGgCuaCCUGg -5'
13954 5' -52.2 NC_003521.1 + 62363 0.71 0.93935
Target:  5'- cGGGCGccGAAGCGuucCCGGUuGGACUg -3'
miRNA:   3'- -CCUGCucCUUCGCuauGGCUA-CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 190579 0.71 0.94386
Target:  5'- cGGCGGuGGAGaUGGUACCaAUGGGCCg -3'
miRNA:   3'- cCUGCU-CCUUcGCUAUGGcUACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 43521 0.71 0.94386
Target:  5'- uGACGcAGGAuGGCGAUgagGCgGAUGGAgCg -3'
miRNA:   3'- cCUGC-UCCU-UCGCUA---UGgCUACCUgG- -5'
13954 5' -52.2 NC_003521.1 + 63325 0.71 0.948146
Target:  5'- -uACGGGGucGCGGUcgucgccaggGCCGAcgGGGCCu -3'
miRNA:   3'- ccUGCUCCuuCGCUA----------UGGCUa-CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 123091 0.71 0.952209
Target:  5'- aGGACGAcgacGGuAGCGGcggcgugucgcUGCCGcgGGACUc -3'
miRNA:   3'- -CCUGCU----CCuUCGCU-----------AUGGCuaCCUGG- -5'
13954 5' -52.2 NC_003521.1 + 41319 0.71 0.955679
Target:  5'- aGGuuGAGGAaggcuucGGUGGUACgGAUGG-CCu -3'
miRNA:   3'- -CCugCUCCU-------UCGCUAUGgCUACCuGG- -5'
13954 5' -52.2 NC_003521.1 + 142852 0.71 0.956053
Target:  5'- aGGCGGGGAGGCGGgggcgGCCacGgcGGGCa -3'
miRNA:   3'- cCUGCUCCUUCGCUa----UGG--CuaCCUGg -5'
13954 5' -52.2 NC_003521.1 + 105802 0.71 0.952209
Target:  5'- aGGACGAGGAcacgGGCGcgAC--AUGGAgCCa -3'
miRNA:   3'- -CCUGCUCCU----UCGCuaUGgcUACCU-GG- -5'
13954 5' -52.2 NC_003521.1 + 75956 0.71 0.948146
Target:  5'- cGGACGGGGGcuggaccGCGGUGCCGgcGuGAUg -3'
miRNA:   3'- -CCUGCUCCUu------CGCUAUGGCuaC-CUGg -5'
13954 5' -52.2 NC_003521.1 + 150161 0.71 0.952209
Target:  5'- cGGAgGAGGGgugGGCGcgGgCGAUGGAa- -3'
miRNA:   3'- -CCUgCUCCU---UCGCuaUgGCUACCUgg -5'
13954 5' -52.2 NC_003521.1 + 204088 0.71 0.956053
Target:  5'- cGACGAGGgcGuCGcgGCgGAgucaGGACCg -3'
miRNA:   3'- cCUGCUCCuuC-GCuaUGgCUa---CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 91867 0.7 0.963098
Target:  5'- cGGACcAGGAcGGCGGcGgCGGUGcGACCa -3'
miRNA:   3'- -CCUGcUCCU-UCGCUaUgGCUAC-CUGG- -5'
13954 5' -52.2 NC_003521.1 + 87385 0.7 0.964406
Target:  5'- aGGACGAggcggcGGAGGUGAcGCCGAcgcucacgcccaggGGAUCg -3'
miRNA:   3'- -CCUGCU------CCUUCGCUaUGGCUa-------------CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 133482 0.7 0.966307
Target:  5'- aGGuCGAGGAucaccuGGCGccgcUGCUGcgGGGCCc -3'
miRNA:   3'- -CCuGCUCCU------UCGCu---AUGGCuaCCUGG- -5'
13954 5' -52.2 NC_003521.1 + 146159 0.7 0.972125
Target:  5'- -cGCGAGGAgAGCGA----GGUGGGCCg -3'
miRNA:   3'- ccUGCUCCU-UCGCUauggCUACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 49088 0.7 0.962095
Target:  5'- cGGACG-GGggGCGAUAUCcacaaagugcgcguGGUG-ACCg -3'
miRNA:   3'- -CCUGCuCCuuCGCUAUGG--------------CUACcUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.