miRNA display CGI


Results 61 - 80 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13954 5' -52.2 NC_003521.1 + 63875 0.71 0.951813
Target:  5'- uGGACGAGGcGGCGc-GCCGGgagcugcagcaguUGGGCa -3'
miRNA:   3'- -CCUGCUCCuUCGCuaUGGCU-------------ACCUGg -5'
13954 5' -52.2 NC_003521.1 + 64950 0.68 0.989673
Target:  5'- uGGcAgGAGGAGGcCGAgaagcUGCCGGUG-ACCu -3'
miRNA:   3'- -CC-UgCUCCUUC-GCU-----AUGGCUACcUGG- -5'
13954 5' -52.2 NC_003521.1 + 65102 0.68 0.992003
Target:  5'- ---gGAGGAagAGCGGcGCCGAcagcUGGACg -3'
miRNA:   3'- ccugCUCCU--UCGCUaUGGCU----ACCUGg -5'
13954 5' -52.2 NC_003521.1 + 66756 0.66 0.997528
Target:  5'- uGGACGAcaucccGcGGGUGAUGCCGccGGcCCa -3'
miRNA:   3'- -CCUGCU------CcUUCGCUAUGGCuaCCuGG- -5'
13954 5' -52.2 NC_003521.1 + 68069 0.67 0.995409
Target:  5'- cGGAUGcuuuGGAGcacGCGcucGCCGGUGGGCa -3'
miRNA:   3'- -CCUGCu---CCUU---CGCua-UGGCUACCUGg -5'
13954 5' -52.2 NC_003521.1 + 68639 0.66 0.996603
Target:  5'- cGACGAGGAgaGGgGAggcaggGCCGGcagcGGugCg -3'
miRNA:   3'- cCUGCUCCU--UCgCUa-----UGGCUa---CCugG- -5'
13954 5' -52.2 NC_003521.1 + 68688 0.69 0.977181
Target:  5'- gGGGCGccGGcGGAGCcGUcGCCGcgGGACCc -3'
miRNA:   3'- -CCUGC--UC-CUUCGcUA-UGGCuaCCUGG- -5'
13954 5' -52.2 NC_003521.1 + 69786 0.68 0.992003
Target:  5'- cGACGAGGGAGCGGccgUCGAgauGACg -3'
miRNA:   3'- cCUGCUCCUUCGCUau-GGCUac-CUGg -5'
13954 5' -52.2 NC_003521.1 + 71466 0.74 0.867625
Target:  5'- gGGACGAGGcggauGCGAauUCGAggaggUGGACCu -3'
miRNA:   3'- -CCUGCUCCuu---CGCUauGGCU-----ACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 72982 0.72 0.919032
Target:  5'- aGAcCGAGGAGGCGuggaucGCCGA-GGACg -3'
miRNA:   3'- cCU-GCUCCUUCGCua----UGGCUaCCUGg -5'
13954 5' -52.2 NC_003521.1 + 73675 0.67 0.994696
Target:  5'- aGGuCGGGGAaguGGCGGcGCagcaGGUGGAUg -3'
miRNA:   3'- -CCuGCUCCU---UCGCUaUGg---CUACCUGg -5'
13954 5' -52.2 NC_003521.1 + 73920 0.67 0.993895
Target:  5'- cGGGCGucuuGGAGGCGGccGCgGcgGaGGCCu -3'
miRNA:   3'- -CCUGCu---CCUUCGCUa-UGgCuaC-CUGG- -5'
13954 5' -52.2 NC_003521.1 + 74863 0.7 0.963098
Target:  5'- cGGCGAGGc-GCGccgGCCGcgGGACg -3'
miRNA:   3'- cCUGCUCCuuCGCua-UGGCuaCCUGg -5'
13954 5' -52.2 NC_003521.1 + 75292 0.68 0.989673
Target:  5'- -cACGAGGugcAGGCGAUGCgCGA--GACCu -3'
miRNA:   3'- ccUGCUCC---UUCGCUAUG-GCUacCUGG- -5'
13954 5' -52.2 NC_003521.1 + 75833 0.71 0.956053
Target:  5'- aGGACGAGGAcaggagggcgcuGGCGuagccGCCGccGGcGCCg -3'
miRNA:   3'- -CCUGCUCCU------------UCGCua---UGGCuaCC-UGG- -5'
13954 5' -52.2 NC_003521.1 + 75956 0.71 0.948146
Target:  5'- cGGACGGGGGcuggaccGCGGUGCCGgcGuGAUg -3'
miRNA:   3'- -CCUGCUCCUu------CGCUAUGGCuaC-CUGg -5'
13954 5' -52.2 NC_003521.1 + 76647 0.68 0.985223
Target:  5'- aGGugGAGGGcgccGCGGgcCUGAgcaugaagggcgUGGACCu -3'
miRNA:   3'- -CCugCUCCUu---CGCUauGGCU------------ACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 76895 0.71 0.93935
Target:  5'- aGGA-GAGGAGGCGGaACgGcgGGGCg -3'
miRNA:   3'- -CCUgCUCCUUCGCUaUGgCuaCCUGg -5'
13954 5' -52.2 NC_003521.1 + 77042 0.66 0.998232
Target:  5'- aGugGAGGAGGaaGGUGgUGGUGGAg- -3'
miRNA:   3'- cCugCUCCUUCg-CUAUgGCUACCUgg -5'
13954 5' -52.2 NC_003521.1 + 78868 0.67 0.993637
Target:  5'- aGACG-GGggGUGGUagcGCCGAcggcgcuggcggggUGGGCg -3'
miRNA:   3'- cCUGCuCCuuCGCUA---UGGCU--------------ACCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.