miRNA display CGI


Results 61 - 80 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13954 5' -52.2 NC_003521.1 + 173448 0.67 0.99381
Target:  5'- uGGugGuGGggGUGAcACCGgcGGuaguggcgucgauACCg -3'
miRNA:   3'- -CCugCuCCuuCGCUaUGGCuaCC-------------UGG- -5'
13954 5' -52.2 NC_003521.1 + 173416 0.85 0.348835
Target:  5'- cGugGAGGggGCGcUGCUGGUGGugCa -3'
miRNA:   3'- cCugCUCCuuCGCuAUGGCUACCugG- -5'
13954 5' -52.2 NC_003521.1 + 172896 0.74 0.860244
Target:  5'- -aGCGGGGgcGCGugaggACCGAggacgUGGACCg -3'
miRNA:   3'- ccUGCUCCuuCGCua---UGGCU-----ACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 171346 0.75 0.820507
Target:  5'- cGGGCGGGGAGGCGG---CGGUGGcACa -3'
miRNA:   3'- -CCUGCUCCUUCGCUaugGCUACC-UGg -5'
13954 5' -52.2 NC_003521.1 + 170176 0.71 0.93935
Target:  5'- uGGuCGAcuucGGAgcGGUGGUGCCGGUGGAg- -3'
miRNA:   3'- -CCuGCU----CCU--UCGCUAUGGCUACCUgg -5'
13954 5' -52.2 NC_003521.1 + 168994 0.68 0.990897
Target:  5'- cGGuCGcGGGAGGCGGg--CGAcgGGGCCg -3'
miRNA:   3'- -CCuGC-UCCUUCGCUaugGCUa-CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 167705 0.69 0.977181
Target:  5'- cGugGAGGAggcggcgguagcAGCGGUAgUGGUaGACCg -3'
miRNA:   3'- cCugCUCCU------------UCGCUAUgGCUAcCUGG- -5'
13954 5' -52.2 NC_003521.1 + 166902 0.66 0.996603
Target:  5'- -cGCGGGGuAGGUGAacUGCCGcagGUGGAgCa -3'
miRNA:   3'- ccUGCUCC-UUCGCU--AUGGC---UACCUgG- -5'
13954 5' -52.2 NC_003521.1 + 165535 0.66 0.997905
Target:  5'- aGACGAG--AGCGAgACCG-UGGugUg -3'
miRNA:   3'- cCUGCUCcuUCGCUaUGGCuACCugG- -5'
13954 5' -52.2 NC_003521.1 + 163884 0.75 0.82881
Target:  5'- -cGCGAcGGAGGCaGGUGCCGAcGGugCg -3'
miRNA:   3'- ccUGCU-CCUUCG-CUAUGGCUaCCugG- -5'
13954 5' -52.2 NC_003521.1 + 163400 0.67 0.993
Target:  5'- gGGACGAGGGcAGacaGAUGCCcGA-GGAg- -3'
miRNA:   3'- -CCUGCUCCU-UCg--CUAUGG-CUaCCUgg -5'
13954 5' -52.2 NC_003521.1 + 155995 0.69 0.97944
Target:  5'- --cCGAGGAGGCGcUGCgCGAgcUGGcCCg -3'
miRNA:   3'- ccuGCUCCUUCGCuAUG-GCU--ACCuGG- -5'
13954 5' -52.2 NC_003521.1 + 155527 0.66 0.998232
Target:  5'- aGGcguACGAGGGguuGCGGauggaACUGggGGGCCg -3'
miRNA:   3'- -CC---UGCUCCUu--CGCUa----UGGCuaCCUGG- -5'
13954 5' -52.2 NC_003521.1 + 154755 0.72 0.915669
Target:  5'- uGGAUGcuGGAggucuugccggcgccGGCGGUGCCGGUG-ACCa -3'
miRNA:   3'- -CCUGCu-CCU---------------UCGCUAUGGCUACcUGG- -5'
13954 5' -52.2 NC_003521.1 + 153034 0.69 0.98418
Target:  5'- aGGCGcAGGAGGCGAcGCCGuuccgcgcgcugcccGUGGAg- -3'
miRNA:   3'- cCUGC-UCCUUCGCUaUGGC---------------UACCUgg -5'
13954 5' -52.2 NC_003521.1 + 152346 0.66 0.997905
Target:  5'- uGGAgacCGAGGAcgccaucacgcAGCuGAaGCUGAcGGACCu -3'
miRNA:   3'- -CCU---GCUCCU-----------UCG-CUaUGGCUaCCUGG- -5'
13954 5' -52.2 NC_003521.1 + 151972 0.75 0.812041
Target:  5'- aGGACGAGGAccacgucuucAGCcuGAaGCUGAcGGACCg -3'
miRNA:   3'- -CCUGCUCCU----------UCG--CUaUGGCUaCCUGG- -5'
13954 5' -52.2 NC_003521.1 + 151365 0.66 0.99655
Target:  5'- gGGugGAagacgugggcacGGggGCGGUgacggcaGCCGgcGcGGCCg -3'
miRNA:   3'- -CCugCU------------CCuuCGCUA-------UGGCuaC-CUGG- -5'
13954 5' -52.2 NC_003521.1 + 151268 0.72 0.913382
Target:  5'- cGACGAGG-AGCGcgACgaGUGGGCCc -3'
miRNA:   3'- cCUGCUCCuUCGCuaUGgcUACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 150206 0.68 0.989673
Target:  5'- gGGACGGGGAGGgGGacgaCGAggaGGGCg -3'
miRNA:   3'- -CCUGCUCCUUCgCUaug-GCUa--CCUGg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.