miRNA display CGI


Results 41 - 60 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13954 5' -52.2 NC_003521.1 + 192851 0.68 0.990897
Target:  5'- uGGACGA-GAAGCGAcGCCGc--GACUu -3'
miRNA:   3'- -CCUGCUcCUUCGCUaUGGCuacCUGG- -5'
13954 5' -52.2 NC_003521.1 + 191448 0.73 0.874804
Target:  5'- aGGACGAGGGAGaCGAggaacaggauCUGGagagGGGCCg -3'
miRNA:   3'- -CCUGCUCCUUC-GCUau--------GGCUa---CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 191410 0.66 0.997568
Target:  5'- cGGGCGAGcGcGGCGcugucgccgucagccUGCCaGAUGGACa -3'
miRNA:   3'- -CCUGCUC-CuUCGCu--------------AUGG-CUACCUGg -5'
13954 5' -52.2 NC_003521.1 + 190579 0.71 0.94386
Target:  5'- cGGCGGuGGAGaUGGUACCaAUGGGCCg -3'
miRNA:   3'- cCUGCU-CCUUcGCUAUGGcUACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 190261 0.68 0.986689
Target:  5'- cGGugGuGGGAGCGGUgacggcgGCUuuuugagaaGGUGGACg -3'
miRNA:   3'- -CCugCuCCUUCGCUA-------UGG---------CUACCUGg -5'
13954 5' -52.2 NC_003521.1 + 188687 0.68 0.986844
Target:  5'- cGGGCGGGGGAuacGCGGgucCCG-UGGcGCCc -3'
miRNA:   3'- -CCUGCUCCUU---CGCUau-GGCuACC-UGG- -5'
13954 5' -52.2 NC_003521.1 + 187915 0.69 0.977181
Target:  5'- cGGCGAGGAggucGGCGAcGCCGucgGUGaACCc -3'
miRNA:   3'- cCUGCUCCU----UCGCUaUGGC---UACcUGG- -5'
13954 5' -52.2 NC_003521.1 + 186931 0.7 0.969314
Target:  5'- aGGACGAGGA----GUGCUGG-GGGCCc -3'
miRNA:   3'- -CCUGCUCCUucgcUAUGGCUaCCUGG- -5'
13954 5' -52.2 NC_003521.1 + 183995 0.68 0.985223
Target:  5'- cGACGAGGGAGauaaGAgACaCGAgGGACg -3'
miRNA:   3'- cCUGCUCCUUCg---CUaUG-GCUaCCUGg -5'
13954 5' -52.2 NC_003521.1 + 182047 0.74 0.860244
Target:  5'- -cACGAGGAucGCGAcUACCGGgcgcugUGGGCCu -3'
miRNA:   3'- ccUGCUCCUu-CGCU-AUGGCU------ACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 180406 0.75 0.82881
Target:  5'- cGACGAGGuGGCGcUGCUccUGGACCu -3'
miRNA:   3'- cCUGCUCCuUCGCuAUGGcuACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 180390 0.68 0.985223
Target:  5'- uGGGCGccGGAGUacUGCUGGUGGugCu -3'
miRNA:   3'- -CCUGCucCUUCGcuAUGGCUACCugG- -5'
13954 5' -52.2 NC_003521.1 + 178023 0.7 0.972125
Target:  5'- uGGGCGccacGGGcAGCGuaccGUACCGcUGGAUCa -3'
miRNA:   3'- -CCUGC----UCCuUCGC----UAUGGCuACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 177469 0.66 0.998232
Target:  5'- cGGCGAcauGGGA-CGAUAUCGAcgauaGGGCCg -3'
miRNA:   3'- cCUGCU---CCUUcGCUAUGGCUa----CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 177129 0.67 0.995409
Target:  5'- uGGGCGGGGAacggauaugAGCcauagaauGUACUGccaaGUGGGCCa -3'
miRNA:   3'- -CCUGCUCCU---------UCGc-------UAUGGC----UACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 176924 0.77 0.739368
Target:  5'- uGGGCGGGGGucguggGGCGGUcaGCCaaGUGGGCCa -3'
miRNA:   3'- -CCUGCUCCU------UCGCUA--UGGc-UACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 174320 0.67 0.993
Target:  5'- aGAUGAGGAcgaGGCGAUcgcaGCCcacgugcGGGCCa -3'
miRNA:   3'- cCUGCUCCU---UCGCUA----UGGcua----CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 174192 0.66 0.997905
Target:  5'- uGACGAGGAGGCaGAUGa-GggGGAg- -3'
miRNA:   3'- cCUGCUCCUUCG-CUAUggCuaCCUgg -5'
13954 5' -52.2 NC_003521.1 + 174026 0.69 0.983454
Target:  5'- gGGA-GAGGAgacGGCGGUGgcCCGcacGUGGGCUg -3'
miRNA:   3'- -CCUgCUCCU---UCGCUAU--GGC---UACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 173504 0.73 0.895079
Target:  5'- uGGGCGAGGAuGUcaAUACCuGAggGGACCa -3'
miRNA:   3'- -CCUGCUCCUuCGc-UAUGG-CUa-CCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.