miRNA display CGI


Results 21 - 40 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13954 5' -52.2 NC_003521.1 + 212890 0.73 0.901403
Target:  5'- cGGGCGAcGGggGUG---UCGGUGGACUc -3'
miRNA:   3'- -CCUGCU-CCuuCGCuauGGCUACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 211102 0.66 0.996603
Target:  5'- uGGACgGAGGGAGgGGa--CGAgcgccacGGACCg -3'
miRNA:   3'- -CCUG-CUCCUUCgCUaugGCUa------CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 206566 0.66 0.997096
Target:  5'- aGGACGAuaGGGCGAcgggGCCGAcaGGCCc -3'
miRNA:   3'- -CCUGCUccUUCGCUa---UGGCUacCUGG- -5'
13954 5' -52.2 NC_003521.1 + 205270 0.67 0.993
Target:  5'- uGGGCGAGaaccuGGCGGUgcgcGCCGA-GGAUg -3'
miRNA:   3'- -CCUGCUCcu---UCGCUA----UGGCUaCCUGg -5'
13954 5' -52.2 NC_003521.1 + 204778 0.68 0.989673
Target:  5'- aGGACGGccaAAGCcacgugccGGUaagACCGGUGGACCa -3'
miRNA:   3'- -CCUGCUcc-UUCG--------CUA---UGGCUACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 204673 0.67 0.993
Target:  5'- gGGGCGuGGAuuucGCGGU-CgGA-GGGCCg -3'
miRNA:   3'- -CCUGCuCCUu---CGCUAuGgCUaCCUGG- -5'
13954 5' -52.2 NC_003521.1 + 204088 0.71 0.956053
Target:  5'- cGACGAGGgcGuCGcgGCgGAgucaGGACCg -3'
miRNA:   3'- cCUGCUCCuuC-GCuaUGgCUa---CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 203893 0.68 0.992003
Target:  5'- gGGAgGAGGA------GCCGggGGACCg -3'
miRNA:   3'- -CCUgCUCCUucgcuaUGGCuaCCUGG- -5'
13954 5' -52.2 NC_003521.1 + 203668 0.7 0.972125
Target:  5'- cGACGgccuGGGAGGCGugGCCG--GGACCu -3'
miRNA:   3'- cCUGC----UCCUUCGCuaUGGCuaCCUGG- -5'
13954 5' -52.2 NC_003521.1 + 202172 0.66 0.997528
Target:  5'- aGGACGcGGAAaCGGacCCGcgGGACa -3'
miRNA:   3'- -CCUGCuCCUUcGCUauGGCuaCCUGg -5'
13954 5' -52.2 NC_003521.1 + 201282 0.76 0.767525
Target:  5'- cGGCGGGGcgccGGGCGGUccuccGCCGAUGGcGCCu -3'
miRNA:   3'- cCUGCUCC----UUCGCUA-----UGGCUACC-UGG- -5'
13954 5' -52.2 NC_003521.1 + 200797 0.66 0.997905
Target:  5'- --cUGGGGAcGCcagACCGGUGGACg -3'
miRNA:   3'- ccuGCUCCUuCGcuaUGGCUACCUGg -5'
13954 5' -52.2 NC_003521.1 + 200336 0.67 0.996043
Target:  5'- uGGCGAGGccaagccGGCGGUaagccaGCCGGUGaGGCa -3'
miRNA:   3'- cCUGCUCCu------UCGCUA------UGGCUAC-CUGg -5'
13954 5' -52.2 NC_003521.1 + 198320 0.68 0.986844
Target:  5'- gGGugGGGGAugGGCGGcuaaACCuguGAcGGGCCg -3'
miRNA:   3'- -CCugCUCCU--UCGCUa---UGG---CUaCCUGG- -5'
13954 5' -52.2 NC_003521.1 + 197987 0.69 0.981528
Target:  5'- -aGCGGGGAuguuGUGGUGgUGGUGGGCg -3'
miRNA:   3'- ccUGCUCCUu---CGCUAUgGCUACCUGg -5'
13954 5' -52.2 NC_003521.1 + 197472 0.66 0.997096
Target:  5'- aGACGGGGAAGgaaGAagucCCGcgcugGGACCg -3'
miRNA:   3'- cCUGCUCCUUCg--CUau--GGCua---CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 197182 0.68 0.989673
Target:  5'- aGGGCu-GGAGGCGGUGgCGGUcccagcgcgGGACUu -3'
miRNA:   3'- -CCUGcuCCUUCGCUAUgGCUA---------CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 196759 0.67 0.994226
Target:  5'- gGGACGAgagacacgagccugaGGAGGCGGaacggGCCGAgu-GCCa -3'
miRNA:   3'- -CCUGCU---------------CCUUCGCUa----UGGCUaccUGG- -5'
13954 5' -52.2 NC_003521.1 + 196696 0.69 0.974745
Target:  5'- cGGAgGAGGAgcAGCGAcgGCCGAcuucACCg -3'
miRNA:   3'- -CCUgCUCCU--UCGCUa-UGGCUacc-UGG- -5'
13954 5' -52.2 NC_003521.1 + 196541 0.66 0.997905
Target:  5'- gGGGgGAGGAA-CGAgacucACCGcgGGuACCc -3'
miRNA:   3'- -CCUgCUCCUUcGCUa----UGGCuaCC-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.