miRNA display CGI


Results 1 - 20 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13954 5' -52.2 NC_003521.1 + 240518 0.66 0.997905
Target:  5'- --cUGGGGAcGCcagACCGGUGGACg -3'
miRNA:   3'- ccuGCUCCUuCGcuaUGGCUACCUGg -5'
13954 5' -52.2 NC_003521.1 + 240033 0.76 0.767525
Target:  5'- cGGCGGGGcgccGGGCGGUccuccGCCGAUGGcGCCu -3'
miRNA:   3'- cCUGCUCC----UUCGCUA-----UGGCUACC-UGG- -5'
13954 5' -52.2 NC_003521.1 + 239143 0.66 0.997528
Target:  5'- aGGACGcGGAAaCGGacCCGcgGGACa -3'
miRNA:   3'- -CCUGCuCCUUcGCUauGGCuaCCUGg -5'
13954 5' -52.2 NC_003521.1 + 232347 0.68 0.988325
Target:  5'- gGGACGcGGAAaaacgagacGCGAcaGCCGAUGGuACa -3'
miRNA:   3'- -CCUGCuCCUU---------CGCUa-UGGCUACC-UGg -5'
13954 5' -52.2 NC_003521.1 + 229640 0.68 0.986844
Target:  5'- gGGACGGGGaAAGUG-UACUGGgaaccugGGugCu -3'
miRNA:   3'- -CCUGCUCC-UUCGCuAUGGCUa------CCugG- -5'
13954 5' -52.2 NC_003521.1 + 229275 0.68 0.988325
Target:  5'- cGACGGcgccGGAGGCG-UAgCGAUaGGACUg -3'
miRNA:   3'- cCUGCU----CCUUCGCuAUgGCUA-CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 229217 0.73 0.888536
Target:  5'- cGGACGAGGAGGacu--CCGA-GGACg -3'
miRNA:   3'- -CCUGCUCCUUCgcuauGGCUaCCUGg -5'
13954 5' -52.2 NC_003521.1 + 228351 0.66 0.997096
Target:  5'- uGGACGAGGuuuccGGCGccucggACgUGAgcugGGACCc -3'
miRNA:   3'- -CCUGCUCCu----UCGCua----UG-GCUa---CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 228027 0.67 0.993
Target:  5'- cGACGAGGAAGaGA-ACCaGAagcagcGGACCa -3'
miRNA:   3'- cCUGCUCCUUCgCUaUGG-CUa-----CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 227087 0.73 0.901403
Target:  5'- cGGGCGAGGAccccauGGCGcuGUACCGucaGGuCCu -3'
miRNA:   3'- -CCUGCUCCU------UCGC--UAUGGCua-CCuGG- -5'
13954 5' -52.2 NC_003521.1 + 226307 0.68 0.986844
Target:  5'- uGGcCGAGGu-GCuGGUGCUGcUGGACUg -3'
miRNA:   3'- -CCuGCUCCuuCG-CUAUGGCuACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 224179 0.77 0.729792
Target:  5'- aGGACGAGGAGGCGGa--CGAUGaaGACg -3'
miRNA:   3'- -CCUGCUCCUUCGCUaugGCUAC--CUGg -5'
13954 5' -52.2 NC_003521.1 + 221987 0.73 0.874804
Target:  5'- gGGACGGGGAGGgagaCGAcGCgGGUGGcggGCCg -3'
miRNA:   3'- -CCUGCUCCUUC----GCUaUGgCUACC---UGG- -5'
13954 5' -52.2 NC_003521.1 + 218085 0.67 0.993
Target:  5'- -aGCGAGGcGGCGGcGCCGGUG-ACg -3'
miRNA:   3'- ccUGCUCCuUCGCUaUGGCUACcUGg -5'
13954 5' -52.2 NC_003521.1 + 217272 0.7 0.958615
Target:  5'- cGGACGAGGAgcaGGCGcugGCCaccaccaccgacagGGUGGugACCa -3'
miRNA:   3'- -CCUGCUCCU---UCGCua-UGG--------------CUACC--UGG- -5'
13954 5' -52.2 NC_003521.1 + 216838 0.66 0.998232
Target:  5'- cGACGAGGAacaggAGCGAUAUgaagCGucccUGG-CCg -3'
miRNA:   3'- cCUGCUCCU-----UCGCUAUG----GCu---ACCuGG- -5'
13954 5' -52.2 NC_003521.1 + 216298 0.66 0.99655
Target:  5'- cGGACGAcguuggcGGggGUGAUGUCGGgaaaGaGGCCg -3'
miRNA:   3'- -CCUGCU-------CCuuCGCUAUGGCUa---C-CUGG- -5'
13954 5' -52.2 NC_003521.1 + 216257 0.71 0.948146
Target:  5'- uGGACGAGGAGGCc--GCCGAguaguagcGCCa -3'
miRNA:   3'- -CCUGCUCCUUCGcuaUGGCUacc-----UGG- -5'
13954 5' -52.2 NC_003521.1 + 215421 0.67 0.995409
Target:  5'- uGGGCGAGcccuccguGAAGCaGA-GCCGcgGGugCu -3'
miRNA:   3'- -CCUGCUC--------CUUCG-CUaUGGCuaCCugG- -5'
13954 5' -52.2 NC_003521.1 + 214023 0.67 0.993
Target:  5'- cGGCGcucaGGGuGGCGuuagACCGGUGG-CCg -3'
miRNA:   3'- cCUGC----UCCuUCGCua--UGGCUACCuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.