miRNA display CGI


Results 1 - 20 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13954 5' -52.2 NC_003521.1 + 117730 0.72 0.929647
Target:  5'- cGACGuGGGAGCGGUACCcuuacGAcGGAgCu -3'
miRNA:   3'- cCUGCuCCUUCGCUAUGG-----CUaCCUgG- -5'
13954 5' -52.2 NC_003521.1 + 91175 0.74 0.836942
Target:  5'- aGGGCGcaugcgccucuGGAAGCGGUACCGcgggcgcgucGUGGGCa -3'
miRNA:   3'- -CCUGCu----------CCUUCGCUAUGGC----------UACCUGg -5'
13954 5' -52.2 NC_003521.1 + 30788 0.74 0.867625
Target:  5'- uGGAUGuGGgcGCGGUagcgcACCGA-GGGCCc -3'
miRNA:   3'- -CCUGCuCCuuCGCUA-----UGGCUaCCUGG- -5'
13954 5' -52.2 NC_003521.1 + 173504 0.73 0.895079
Target:  5'- uGGGCGAGGAuGUcaAUACCuGAggGGACCa -3'
miRNA:   3'- -CCUGCUCCUuCGc-UAUGG-CUa-CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 212890 0.73 0.901403
Target:  5'- cGGGCGAcGGggGUG---UCGGUGGACUc -3'
miRNA:   3'- -CCUGCU-CCuuCGCuauGGCUACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 48938 0.72 0.913382
Target:  5'- cGGCGGGGAgggagaAGCGGUGCaGGUGGAg- -3'
miRNA:   3'- cCUGCUCCU------UCGCUAUGgCUACCUgg -5'
13954 5' -52.2 NC_003521.1 + 151268 0.72 0.913382
Target:  5'- cGACGAGG-AGCGcgACgaGUGGGCCc -3'
miRNA:   3'- cCUGCUCCuUCGCuaUGgcUACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 91365 0.72 0.919032
Target:  5'- cGGugGGGGAGGgG--GCCGAaccccGGGCCc -3'
miRNA:   3'- -CCugCUCCUUCgCuaUGGCUa----CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 98842 0.72 0.919032
Target:  5'- cGGCGAGGAGGUGAUGgUGGuguUGGuACUg -3'
miRNA:   3'- cCUGCUCCUUCGCUAUgGCU---ACC-UGG- -5'
13954 5' -52.2 NC_003521.1 + 117859 0.74 0.836137
Target:  5'- cGACGAGGAccugaguuuccccGGCGAgGCCGAgcacGGCCg -3'
miRNA:   3'- cCUGCUCCU-------------UCGCUaUGGCUac--CUGG- -5'
13954 5' -52.2 NC_003521.1 + 163884 0.75 0.82881
Target:  5'- -cGCGAcGGAGGCaGGUGCCGAcGGugCg -3'
miRNA:   3'- ccUGCU-CCUUCG-CUAUGGCUaCCugG- -5'
13954 5' -52.2 NC_003521.1 + 82753 0.75 0.82881
Target:  5'- gGGACGAGaucacGCGcgACCGgcGGGCCg -3'
miRNA:   3'- -CCUGCUCcuu--CGCuaUGGCuaCCUGG- -5'
13954 5' -52.2 NC_003521.1 + 100601 0.83 0.396521
Target:  5'- uGGACGAGGcGGCGAagcgucucuugGCCGggGGACCu -3'
miRNA:   3'- -CCUGCUCCuUCGCUa----------UGGCuaCCUGG- -5'
13954 5' -52.2 NC_003521.1 + 91920 0.82 0.466246
Target:  5'- aGGACGGcGGcGGCGAUG-CGGUGGACCc -3'
miRNA:   3'- -CCUGCU-CCuUCGCUAUgGCUACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 105157 0.78 0.660977
Target:  5'- aGGACGAGGuGGUGAcgacgccGCCGAcgcUGGGCCc -3'
miRNA:   3'- -CCUGCUCCuUCGCUa------UGGCU---ACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 176924 0.77 0.739368
Target:  5'- uGGGCGGGGGucguggGGCGGUcaGCCaaGUGGGCCa -3'
miRNA:   3'- -CCUGCUCCU------UCGCUA--UGGc-UACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 39079 0.76 0.758243
Target:  5'- uGGACGAGGGuuGCGGaguUACCaGUGGcACCg -3'
miRNA:   3'- -CCUGCUCCUu-CGCU---AUGGcUACC-UGG- -5'
13954 5' -52.2 NC_003521.1 + 49042 0.76 0.766602
Target:  5'- cGGACGAcagcauguugGGAGGUGcgGacaggacCCGGUGGACCg -3'
miRNA:   3'- -CCUGCU----------CCUUCGCuaU-------GGCUACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 118718 0.76 0.767525
Target:  5'- uGGGCGAGGGGcGCGGcACCGGcacGGGCUg -3'
miRNA:   3'- -CCUGCUCCUU-CGCUaUGGCUa--CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 240033 0.76 0.767525
Target:  5'- cGGCGGGGcgccGGGCGGUccuccGCCGAUGGcGCCu -3'
miRNA:   3'- cCUGCUCC----UUCGCUA-----UGGCUACC-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.