miRNA display CGI


Results 1 - 20 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13954 5' -52.2 NC_003521.1 + 133309 0.66 0.997528
Target:  5'- gGGucCGAGGAAcGUGGUaugGCCGAa-GACCa -3'
miRNA:   3'- -CCu-GCUCCUU-CGCUA---UGGCUacCUGG- -5'
13954 5' -52.2 NC_003521.1 + 68639 0.66 0.996603
Target:  5'- cGACGAGGAgaGGgGAggcaggGCCGGcagcGGugCg -3'
miRNA:   3'- cCUGCUCCU--UCgCUa-----UGGCUa---CCugG- -5'
13954 5' -52.2 NC_003521.1 + 151365 0.66 0.99655
Target:  5'- gGGugGAagacgugggcacGGggGCGGUgacggcaGCCGgcGcGGCCg -3'
miRNA:   3'- -CCugCU------------CCuuCGCUA-------UGGCuaC-CUGG- -5'
13954 5' -52.2 NC_003521.1 + 148410 0.66 0.996603
Target:  5'- -uGCGAGGGAGCcauGGUGCgGgcGG-CCg -3'
miRNA:   3'- ccUGCUCCUUCG---CUAUGgCuaCCuGG- -5'
13954 5' -52.2 NC_003521.1 + 211102 0.66 0.996603
Target:  5'- uGGACgGAGGGAGgGGa--CGAgcgccacGGACCg -3'
miRNA:   3'- -CCUG-CUCCUUCgCUaugGCUa------CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 206566 0.66 0.997096
Target:  5'- aGGACGAuaGGGCGAcgggGCCGAcaGGCCc -3'
miRNA:   3'- -CCUGCUccUUCGCUa---UGGCUacCUGG- -5'
13954 5' -52.2 NC_003521.1 + 240518 0.66 0.997905
Target:  5'- --cUGGGGAcGCcagACCGGUGGACg -3'
miRNA:   3'- ccuGCUCCUuCGcuaUGGCUACCUGg -5'
13954 5' -52.2 NC_003521.1 + 66756 0.66 0.997528
Target:  5'- uGGACGAcaucccGcGGGUGAUGCCGccGGcCCa -3'
miRNA:   3'- -CCUGCU------CcUUCGCUAUGGCuaCCuGG- -5'
13954 5' -52.2 NC_003521.1 + 133218 0.66 0.997096
Target:  5'- gGGGCGcGGGuucaggGGCGAUGgCGGUcgaGGACg -3'
miRNA:   3'- -CCUGCuCCU------UCGCUAUgGCUA---CCUGg -5'
13954 5' -52.2 NC_003521.1 + 103117 0.66 0.997528
Target:  5'- aGGACGcGG-GGUGAgGCUGGUGGggagaGCCc -3'
miRNA:   3'- -CCUGCuCCuUCGCUaUGGCUACC-----UGG- -5'
13954 5' -52.2 NC_003521.1 + 216298 0.66 0.99655
Target:  5'- cGGACGAcguuggcGGggGUGAUGUCGGgaaaGaGGCCg -3'
miRNA:   3'- -CCUGCU-------CCuuCGCUAUGGCUa---C-CUGG- -5'
13954 5' -52.2 NC_003521.1 + 138708 0.66 0.996603
Target:  5'- uGGGCGGcacGGgcGCug-GCUGGUGGugCg -3'
miRNA:   3'- -CCUGCU---CCuuCGcuaUGGCUACCugG- -5'
13954 5' -52.2 NC_003521.1 + 42307 0.66 0.996655
Target:  5'- uGGGCGAGGuggguagcagcugcGUGGUGCCGgcGGcgucugucguGCCg -3'
miRNA:   3'- -CCUGCUCCuu------------CGCUAUGGCuaCC----------UGG- -5'
13954 5' -52.2 NC_003521.1 + 202172 0.66 0.997528
Target:  5'- aGGACGcGGAAaCGGacCCGcgGGACa -3'
miRNA:   3'- -CCUGCuCCUUcGCUauGGCuaCCUGg -5'
13954 5' -52.2 NC_003521.1 + 11984 0.66 0.996603
Target:  5'- gGGGgGAGGGAGCuGUAUCuGUGuACCg -3'
miRNA:   3'- -CCUgCUCCUUCGcUAUGGcUACcUGG- -5'
13954 5' -52.2 NC_003521.1 + 117503 0.66 0.998232
Target:  5'- cGGCGGGGcguacGGCGGUAugcacuCCG-UGGGCUa -3'
miRNA:   3'- cCUGCUCCu----UCGCUAU------GGCuACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 177469 0.66 0.998232
Target:  5'- cGGCGAcauGGGA-CGAUAUCGAcgauaGGGCCg -3'
miRNA:   3'- cCUGCU---CCUUcGCUAUGGCUa----CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 81610 0.66 0.996807
Target:  5'- uGGACGAGGugAAGUGAagggagucgugggucUcggcGCgGAUGGugCg -3'
miRNA:   3'- -CCUGCUCC--UUCGCU---------------A----UGgCUACCugG- -5'
13954 5' -52.2 NC_003521.1 + 84117 0.66 0.996603
Target:  5'- aGGACgGAGGAGGaGGagUCGAUGGAg- -3'
miRNA:   3'- -CCUG-CUCCUUCgCUauGGCUACCUgg -5'
13954 5' -52.2 NC_003521.1 + 39005 0.66 0.997905
Target:  5'- aGGuguCGAGGccgGAGCGGgcgccGCCGAaGGAUUg -3'
miRNA:   3'- -CCu--GCUCC---UUCGCUa----UGGCUaCCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.