miRNA display CGI


Results 1 - 20 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13954 5' -52.2 NC_003521.1 + 430 0.67 0.996043
Target:  5'- uGGCGAGGccaagccGGCGGUaagccaGCCGGUGaGGCa -3'
miRNA:   3'- cCUGCUCCu------UCGCUA------UGGCUAC-CUGg -5'
13954 5' -52.2 NC_003521.1 + 4268 0.67 0.99462
Target:  5'- aGGACGGcGGAgccgacgAGCGAcGCCGAacGACg -3'
miRNA:   3'- -CCUGCU-CCU-------UCGCUaUGGCUacCUGg -5'
13954 5' -52.2 NC_003521.1 + 4749 0.74 0.852666
Target:  5'- cGGACGGGGGAGgaCGAUaaaagAUCGG-GGGCCg -3'
miRNA:   3'- -CCUGCUCCUUC--GCUA-----UGGCUaCCUGG- -5'
13954 5' -52.2 NC_003521.1 + 4949 0.75 0.794647
Target:  5'- gGGACGGGGGGgaccgcGCGAcgucGCCGGcgGGACCu -3'
miRNA:   3'- -CCUGCUCCUU------CGCUa---UGGCUa-CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 6067 0.71 0.956053
Target:  5'- cGACGAagGGAAuGCGAcgGCCGGUGcGGCg -3'
miRNA:   3'- cCUGCU--CCUU-CGCUa-UGGCUAC-CUGg -5'
13954 5' -52.2 NC_003521.1 + 6252 0.76 0.776692
Target:  5'- cGACGGGGAcGGCGAUAgCG-UGGGCa -3'
miRNA:   3'- cCUGCUCCU-UCGCUAUgGCuACCUGg -5'
13954 5' -52.2 NC_003521.1 + 11597 0.68 0.990897
Target:  5'- aGACGGuguGGAAGCGAcgucgaacgUGCCGGUGaGAgUa -3'
miRNA:   3'- cCUGCU---CCUUCGCU---------AUGGCUAC-CUgG- -5'
13954 5' -52.2 NC_003521.1 + 11876 0.68 0.988325
Target:  5'- uGGGUGAGauuGCGAUACCcgccaGUGGACCc -3'
miRNA:   3'- -CCUGCUCcuuCGCUAUGGc----UACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 11962 0.81 0.512901
Target:  5'- cGGACGAGGAA-UGA-GCCGGUGGugCa -3'
miRNA:   3'- -CCUGCUCCUUcGCUaUGGCUACCugG- -5'
13954 5' -52.2 NC_003521.1 + 11984 0.66 0.996603
Target:  5'- gGGGgGAGGGAGCuGUAUCuGUGuACCg -3'
miRNA:   3'- -CCUgCUCCUUCGcUAUGGcUACcUGG- -5'
13954 5' -52.2 NC_003521.1 + 17152 0.7 0.969314
Target:  5'- cGGcCGAGGggGuCGAggcgGCCGcgGGGa- -3'
miRNA:   3'- -CCuGCUCCuuC-GCUa---UGGCuaCCUgg -5'
13954 5' -52.2 NC_003521.1 + 19637 0.67 0.993094
Target:  5'- cGGACGAGGGAGaagaggcguuauauaGAcgGCaGGUGGcGCCa -3'
miRNA:   3'- -CCUGCUCCUUCg--------------CUa-UGgCUACC-UGG- -5'
13954 5' -52.2 NC_003521.1 + 19905 0.69 0.981528
Target:  5'- cGGCGugcGGGAGCG--GCUGGUGGuCCu -3'
miRNA:   3'- cCUGCu--CCUUCGCuaUGGCUACCuGG- -5'
13954 5' -52.2 NC_003521.1 + 20175 0.68 0.985223
Target:  5'- aGGACaGAGGGAGCGuucccaUGAUGGGa- -3'
miRNA:   3'- -CCUG-CUCCUUCGCuaug--GCUACCUgg -5'
13954 5' -52.2 NC_003521.1 + 23890 0.68 0.989673
Target:  5'- uGAUGAGGcAGGUGAaacccgugaUGCCGAUgaaGGACa -3'
miRNA:   3'- cCUGCUCC-UUCGCU---------AUGGCUA---CCUGg -5'
13954 5' -52.2 NC_003521.1 + 24354 0.68 0.99078
Target:  5'- gGGACcugaAGGugcuGGUGAUGCUGAUGGuaguucucaaaaaGCCg -3'
miRNA:   3'- -CCUGc---UCCu---UCGCUAUGGCUACC-------------UGG- -5'
13954 5' -52.2 NC_003521.1 + 24558 1.14 0.006141
Target:  5'- gGGACGAGGAAGCGAUACCGAUGGACCu -3'
miRNA:   3'- -CCUGCUCCUUCGCUAUGGCUACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 26778 0.67 0.993
Target:  5'- cGAUGGGGAcGCGc--UCGggGGGCCa -3'
miRNA:   3'- cCUGCUCCUuCGCuauGGCuaCCUGG- -5'
13954 5' -52.2 NC_003521.1 + 28270 0.7 0.965366
Target:  5'- uGGAgGAGGAcAGCGAggUGCCGcucacgcugccgccGUGG-CCg -3'
miRNA:   3'- -CCUgCUCCU-UCGCU--AUGGC--------------UACCuGG- -5'
13954 5' -52.2 NC_003521.1 + 28481 0.69 0.981327
Target:  5'- -aGCGAGGGgaagcugGGCGGUugCGAuaccuUGGGCg -3'
miRNA:   3'- ccUGCUCCU-------UCGCUAugGCU-----ACCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.