miRNA display CGI


Results 21 - 40 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13954 5' -52.2 NC_003521.1 + 28855 0.69 0.977181
Target:  5'- cGGGUGAGGucGCGcucGCCGggGGACa -3'
miRNA:   3'- -CCUGCUCCuuCGCua-UGGCuaCCUGg -5'
13954 5' -52.2 NC_003521.1 + 30788 0.74 0.867625
Target:  5'- uGGAUGuGGgcGCGGUagcgcACCGA-GGGCCc -3'
miRNA:   3'- -CCUGCuCCuuCGCUA-----UGGCUaCCUGG- -5'
13954 5' -52.2 NC_003521.1 + 31590 0.75 0.82881
Target:  5'- aGGCGAGGccGCGAUGCUGcgcaagGGACUc -3'
miRNA:   3'- cCUGCUCCuuCGCUAUGGCua----CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 32005 0.7 0.959681
Target:  5'- cGGuCGAGGcGGCGGaGgCGGUGG-CCg -3'
miRNA:   3'- -CCuGCUCCuUCGCUaUgGCUACCuGG- -5'
13954 5' -52.2 NC_003521.1 + 34086 0.67 0.996043
Target:  5'- -uGCaGGGAGGUGuggUCGAUGGGCCc -3'
miRNA:   3'- ccUGcUCCUUCGCuauGGCUACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 36365 0.68 0.986844
Target:  5'- cGGCGGGGAggguGGCGAgggUGgUGAUGGaggcGCCg -3'
miRNA:   3'- cCUGCUCCU----UCGCU---AUgGCUACC----UGG- -5'
13954 5' -52.2 NC_003521.1 + 36946 0.68 0.989544
Target:  5'- aGGACGAGGAAGCcGAgcugcCCGGcgaacaugacgugUGGGUCu -3'
miRNA:   3'- -CCUGCUCCUUCG-CUau---GGCU-------------ACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 39005 0.66 0.997905
Target:  5'- aGGuguCGAGGccgGAGCGGgcgccGCCGAaGGAUUg -3'
miRNA:   3'- -CCu--GCUCC---UUCGCUa----UGGCUaCCUGG- -5'
13954 5' -52.2 NC_003521.1 + 39079 0.76 0.758243
Target:  5'- uGGACGAGGGuuGCGGaguUACCaGUGGcACCg -3'
miRNA:   3'- -CCUGCUCCUu-CGCU---AUGGcUACC-UGG- -5'
13954 5' -52.2 NC_003521.1 + 40895 0.68 0.992003
Target:  5'- gGGGCGGGGGucaguuuaauAGCGAgGCgGggGcGGCCc -3'
miRNA:   3'- -CCUGCUCCU----------UCGCUaUGgCuaC-CUGG- -5'
13954 5' -52.2 NC_003521.1 + 41319 0.71 0.955679
Target:  5'- aGGuuGAGGAaggcuucGGUGGUACgGAUGG-CCu -3'
miRNA:   3'- -CCugCUCCU-------UCGCUAUGgCUACCuGG- -5'
13954 5' -52.2 NC_003521.1 + 42307 0.66 0.996655
Target:  5'- uGGGCGAGGuggguagcagcugcGUGGUGCCGgcGGcgucugucguGCCg -3'
miRNA:   3'- -CCUGCUCCuu------------CGCUAUGGCuaCC----------UGG- -5'
13954 5' -52.2 NC_003521.1 + 42579 0.67 0.995409
Target:  5'- -aGCGGGGGAGCGggGCCaaaaacaggggGAUGcGuACCg -3'
miRNA:   3'- ccUGCUCCUUCGCuaUGG-----------CUAC-C-UGG- -5'
13954 5' -52.2 NC_003521.1 + 43143 0.69 0.981528
Target:  5'- uGGGCGuGGAGGUGcacgcGCUGGUGGcGCUg -3'
miRNA:   3'- -CCUGCuCCUUCGCua---UGGCUACC-UGG- -5'
13954 5' -52.2 NC_003521.1 + 43435 0.71 0.956053
Target:  5'- cGACGAGGAGGCGGcGgCGGcccUGGAa- -3'
miRNA:   3'- cCUGCUCCUUCGCUaUgGCU---ACCUgg -5'
13954 5' -52.2 NC_003521.1 + 43521 0.71 0.94386
Target:  5'- uGACGcAGGAuGGCGAUgagGCgGAUGGAgCg -3'
miRNA:   3'- cCUGC-UCCU-UCGCUA---UGgCUACCUgG- -5'
13954 5' -52.2 NC_003521.1 + 43629 0.71 0.94386
Target:  5'- aGGACGAGGAggaggcGGCGGccGCCGccGGAg- -3'
miRNA:   3'- -CCUGCUCCU------UCGCUa-UGGCuaCCUgg -5'
13954 5' -52.2 NC_003521.1 + 43780 0.66 0.998232
Target:  5'- cGGGaGAGGggGCGGcaggcGCUGAcGGAUg -3'
miRNA:   3'- -CCUgCUCCuuCGCUa----UGGCUaCCUGg -5'
13954 5' -52.2 NC_003521.1 + 44947 0.67 0.993
Target:  5'- aGGACGGGGAggaagggcGGCGAcACCGc--GAUCc -3'
miRNA:   3'- -CCUGCUCCU--------UCGCUaUGGCuacCUGG- -5'
13954 5' -52.2 NC_003521.1 + 45678 0.66 0.997096
Target:  5'- aGGcCGAGGAGGUGGaggccacgGCCGAcgaagagGcGGCCg -3'
miRNA:   3'- -CCuGCUCCUUCGCUa-------UGGCUa------C-CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.