miRNA display CGI


Results 41 - 60 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13954 5' -52.2 NC_003521.1 + 46443 0.68 0.988325
Target:  5'- cGGCGGGGcuGCGGggGCUGGUcGGCCu -3'
miRNA:   3'- cCUGCUCCuuCGCUa-UGGCUAcCUGG- -5'
13954 5' -52.2 NC_003521.1 + 48938 0.72 0.913382
Target:  5'- cGGCGGGGAgggagaAGCGGUGCaGGUGGAg- -3'
miRNA:   3'- cCUGCUCCU------UCGCUAUGgCUACCUgg -5'
13954 5' -52.2 NC_003521.1 + 49042 0.76 0.766602
Target:  5'- cGGACGAcagcauguugGGAGGUGcgGacaggacCCGGUGGACCg -3'
miRNA:   3'- -CCUGCU----------CCUUCGCuaU-------GGCUACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 49088 0.7 0.962095
Target:  5'- cGGACG-GGggGCGAUAUCcacaaagugcgcguGGUG-ACCg -3'
miRNA:   3'- -CCUGCuCCuuCGCUAUGG--------------CUACcUGG- -5'
13954 5' -52.2 NC_003521.1 + 49844 0.68 0.992415
Target:  5'- ---gGAGGAGGCGGcGCCGcggcccacgcggcagGUGGugCu -3'
miRNA:   3'- ccugCUCCUUCGCUaUGGC---------------UACCugG- -5'
13954 5' -52.2 NC_003521.1 + 50109 0.72 0.919032
Target:  5'- uGGACGAGGccGAGCGGcagcagGCgcaGGUGGACg -3'
miRNA:   3'- -CCUGCUCC--UUCGCUa-----UGg--CUACCUGg -5'
13954 5' -52.2 NC_003521.1 + 53514 0.67 0.994696
Target:  5'- cGGCGucGcAGCG--GCCGAUGGugCu -3'
miRNA:   3'- cCUGCucCuUCGCuaUGGCUACCugG- -5'
13954 5' -52.2 NC_003521.1 + 55360 0.7 0.959681
Target:  5'- cGGGUGcGGAGGUGAUcGCCGAgcgGGugCg -3'
miRNA:   3'- -CCUGCuCCUUCGCUA-UGGCUa--CCugG- -5'
13954 5' -52.2 NC_003521.1 + 55915 0.68 0.989673
Target:  5'- cGACGAGGuGGCGc-ACCuGUGGAgCg -3'
miRNA:   3'- cCUGCUCCuUCGCuaUGGcUACCUgG- -5'
13954 5' -52.2 NC_003521.1 + 57813 0.66 0.998232
Target:  5'- aGGACGAGGAGGauu--UCG--GGGCCu -3'
miRNA:   3'- -CCUGCUCCUUCgcuauGGCuaCCUGG- -5'
13954 5' -52.2 NC_003521.1 + 58030 0.67 0.995409
Target:  5'- cGACGAGGgcGCGcgcguguUGCUGcUGGcgGCCa -3'
miRNA:   3'- cCUGCUCCuuCGCu------AUGGCuACC--UGG- -5'
13954 5' -52.2 NC_003521.1 + 58228 0.73 0.874804
Target:  5'- -aGCGAGGAcgaugaugauAGCGAgAUCGAggagGGACCg -3'
miRNA:   3'- ccUGCUCCU----------UCGCUaUGGCUa---CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 60292 0.66 0.997096
Target:  5'- uGACGGGGAAgGUGAgGCCGGUGc--- -3'
miRNA:   3'- cCUGCUCCUU-CGCUaUGGCUACcugg -5'
13954 5' -52.2 NC_003521.1 + 60870 0.67 0.996043
Target:  5'- cGGCGuu--GGUGGUGCCGcgcguGUGGGCCu -3'
miRNA:   3'- cCUGCuccuUCGCUAUGGC-----UACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 62292 0.69 0.974745
Target:  5'- gGGACGGGcGAGGC-AUGCCcGgcGGGCg -3'
miRNA:   3'- -CCUGCUC-CUUCGcUAUGG-CuaCCUGg -5'
13954 5' -52.2 NC_003521.1 + 62363 0.71 0.93935
Target:  5'- cGGGCGccGAAGCGuucCCGGUuGGACUg -3'
miRNA:   3'- -CCUGCucCUUCGCuauGGCUA-CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 63111 0.69 0.97944
Target:  5'- aGGCGGGGcacaccugGGGCGGUGCgGGUaGGGCg -3'
miRNA:   3'- cCUGCUCC--------UUCGCUAUGgCUA-CCUGg -5'
13954 5' -52.2 NC_003521.1 + 63151 0.73 0.881776
Target:  5'- gGGAUGGGGAguggccGGuCGGUACCGGgagGGAUg -3'
miRNA:   3'- -CCUGCUCCU------UC-GCUAUGGCUa--CCUGg -5'
13954 5' -52.2 NC_003521.1 + 63325 0.71 0.948146
Target:  5'- -uACGGGGucGCGGUcgucgccaggGCCGAcgGGGCCu -3'
miRNA:   3'- ccUGCUCCuuCGCUA----------UGGCUa-CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 63662 0.69 0.983454
Target:  5'- uGGAC-AGGAAGgcguUGAUGCCGGUGuugaaGCCg -3'
miRNA:   3'- -CCUGcUCCUUC----GCUAUGGCUACc----UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.