miRNA display CGI


Results 41 - 60 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13954 5' -52.2 NC_003521.1 + 39079 0.76 0.758243
Target:  5'- uGGACGAGGGuuGCGGaguUACCaGUGGcACCg -3'
miRNA:   3'- -CCUGCUCCUu-CGCU---AUGGcUACC-UGG- -5'
13954 5' -52.2 NC_003521.1 + 176924 0.77 0.739368
Target:  5'- uGGGCGGGGGucguggGGCGGUcaGCCaaGUGGGCCa -3'
miRNA:   3'- -CCUGCUCCU------UCGCUA--UGGc-UACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 105157 0.78 0.660977
Target:  5'- aGGACGAGGuGGUGAcgacgccGCCGAcgcUGGGCCc -3'
miRNA:   3'- -CCUGCUCCuUCGCUa------UGGCU---ACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 91920 0.82 0.466246
Target:  5'- aGGACGGcGGcGGCGAUG-CGGUGGACCc -3'
miRNA:   3'- -CCUGCU-CCuUCGCUAUgGCUACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 100601 0.83 0.396521
Target:  5'- uGGACGAGGcGGCGAagcgucucuugGCCGggGGACCu -3'
miRNA:   3'- -CCUGCUCCuUCGCUa----------UGGCuaCCUGG- -5'
13954 5' -52.2 NC_003521.1 + 173504 0.73 0.895079
Target:  5'- uGGGCGAGGAuGUcaAUACCuGAggGGACCa -3'
miRNA:   3'- -CCUGCUCCUuCGc-UAUGG-CUa-CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 212890 0.73 0.901403
Target:  5'- cGGGCGAcGGggGUG---UCGGUGGACUc -3'
miRNA:   3'- -CCUGCU-CCuuCGCuauGGCUACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 43435 0.71 0.956053
Target:  5'- cGACGAGGAGGCGGcGgCGGcccUGGAa- -3'
miRNA:   3'- cCUGCUCCUUCGCUaUgGCU---ACCUgg -5'
13954 5' -52.2 NC_003521.1 + 115753 0.71 0.956053
Target:  5'- aGGuccuCGGGGAAGgGAUcagaagGCCGGUGuGACg -3'
miRNA:   3'- -CCu---GCUCCUUCgCUA------UGGCUAC-CUGg -5'
13954 5' -52.2 NC_003521.1 + 63875 0.71 0.951813
Target:  5'- uGGACGAGGcGGCGc-GCCGGgagcugcagcaguUGGGCa -3'
miRNA:   3'- -CCUGCUCCuUCGCuaUGGCU-------------ACCUGg -5'
13954 5' -52.2 NC_003521.1 + 216257 0.71 0.948146
Target:  5'- uGGACGAGGAGGCc--GCCGAguaguagcGCCa -3'
miRNA:   3'- -CCUGCUCCUUCGcuaUGGCUacc-----UGG- -5'
13954 5' -52.2 NC_003521.1 + 111198 0.71 0.94386
Target:  5'- cGGACGGuGGGcugGGCGAUggcGCCGGaaagUGGGCg -3'
miRNA:   3'- -CCUGCU-CCU---UCGCUA---UGGCU----ACCUGg -5'
13954 5' -52.2 NC_003521.1 + 43629 0.71 0.94386
Target:  5'- aGGACGAGGAggaggcGGCGGccGCCGccGGAg- -3'
miRNA:   3'- -CCUGCUCCU------UCGCUa-UGGCuaCCUgg -5'
13954 5' -52.2 NC_003521.1 + 170176 0.71 0.93935
Target:  5'- uGGuCGAcuucGGAgcGGUGGUGCCGGUGGAg- -3'
miRNA:   3'- -CCuGCU----CCU--UCGCUAUGGCUACCUgg -5'
13954 5' -52.2 NC_003521.1 + 131104 0.71 0.93935
Target:  5'- cGGACGGcGggGCGGcgcggcUGCCGGgaagGGACa -3'
miRNA:   3'- -CCUGCUcCuuCGCU------AUGGCUa---CCUGg -5'
13954 5' -52.2 NC_003521.1 + 117730 0.72 0.929647
Target:  5'- cGACGuGGGAGCGGUACCcuuacGAcGGAgCu -3'
miRNA:   3'- cCUGCuCCUUCGCUAUGG-----CUaCCUgG- -5'
13954 5' -52.2 NC_003521.1 + 98842 0.72 0.919032
Target:  5'- cGGCGAGGAGGUGAUGgUGGuguUGGuACUg -3'
miRNA:   3'- cCUGCUCCUUCGCUAUgGCU---ACC-UGG- -5'
13954 5' -52.2 NC_003521.1 + 91365 0.72 0.919032
Target:  5'- cGGugGGGGAGGgG--GCCGAaccccGGGCCc -3'
miRNA:   3'- -CCugCUCCUUCgCuaUGGCUa----CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 151268 0.72 0.913382
Target:  5'- cGACGAGG-AGCGcgACgaGUGGGCCc -3'
miRNA:   3'- cCUGCUCCuUCGCuaUGgcUACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 48938 0.72 0.913382
Target:  5'- cGGCGGGGAgggagaAGCGGUGCaGGUGGAg- -3'
miRNA:   3'- cCUGCUCCU------UCGCUAUGgCUACCUgg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.