miRNA display CGI


Results 41 - 60 of 258 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13954 5' -52.2 NC_003521.1 + 163884 0.75 0.82881
Target:  5'- -cGCGAcGGAGGCaGGUGCCGAcGGugCg -3'
miRNA:   3'- ccUGCU-CCUUCG-CUAUGGCUaCCugG- -5'
13954 5' -52.2 NC_003521.1 + 117859 0.74 0.836137
Target:  5'- cGACGAGGAccugaguuuccccGGCGAgGCCGAgcacGGCCg -3'
miRNA:   3'- cCUGCUCCU-------------UCGCUaUGGCUac--CUGG- -5'
13954 5' -52.2 NC_003521.1 + 91175 0.74 0.836942
Target:  5'- aGGGCGcaugcgccucuGGAAGCGGUACCGcgggcgcgucGUGGGCa -3'
miRNA:   3'- -CCUGCu----------CCUUCGCUAUGGC----------UACCUGg -5'
13954 5' -52.2 NC_003521.1 + 30788 0.74 0.867625
Target:  5'- uGGAUGuGGgcGCGGUagcgcACCGA-GGGCCc -3'
miRNA:   3'- -CCUGCuCCuuCGCUA-----UGGCUaCCUGG- -5'
13954 5' -52.2 NC_003521.1 + 173504 0.73 0.895079
Target:  5'- uGGGCGAGGAuGUcaAUACCuGAggGGACCa -3'
miRNA:   3'- -CCUGCUCCUuCGc-UAUGG-CUa-CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 212890 0.73 0.901403
Target:  5'- cGGGCGAcGGggGUG---UCGGUGGACUc -3'
miRNA:   3'- -CCUGCU-CCuuCGCuauGGCUACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 48938 0.72 0.913382
Target:  5'- cGGCGGGGAgggagaAGCGGUGCaGGUGGAg- -3'
miRNA:   3'- cCUGCUCCU------UCGCUAUGgCUACCUgg -5'
13954 5' -52.2 NC_003521.1 + 151268 0.72 0.913382
Target:  5'- cGACGAGG-AGCGcgACgaGUGGGCCc -3'
miRNA:   3'- cCUGCUCCuUCGCuaUGgcUACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 91365 0.72 0.919032
Target:  5'- cGGugGGGGAGGgG--GCCGAaccccGGGCCc -3'
miRNA:   3'- -CCugCUCCUUCgCuaUGGCUa----CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 98842 0.72 0.919032
Target:  5'- cGGCGAGGAGGUGAUGgUGGuguUGGuACUg -3'
miRNA:   3'- cCUGCUCCUUCGCUAUgGCU---ACC-UGG- -5'
13954 5' -52.2 NC_003521.1 + 117730 0.72 0.929647
Target:  5'- cGACGuGGGAGCGGUACCcuuacGAcGGAgCu -3'
miRNA:   3'- cCUGCuCCUUCGCUAUGG-----CUaCCUgG- -5'
13954 5' -52.2 NC_003521.1 + 131104 0.71 0.93935
Target:  5'- cGGACGGcGggGCGGcgcggcUGCCGGgaagGGACa -3'
miRNA:   3'- -CCUGCUcCuuCGCU------AUGGCUa---CCUGg -5'
13954 5' -52.2 NC_003521.1 + 170176 0.71 0.93935
Target:  5'- uGGuCGAcuucGGAgcGGUGGUGCCGGUGGAg- -3'
miRNA:   3'- -CCuGCU----CCU--UCGCUAUGGCUACCUgg -5'
13954 5' -52.2 NC_003521.1 + 43629 0.71 0.94386
Target:  5'- aGGACGAGGAggaggcGGCGGccGCCGccGGAg- -3'
miRNA:   3'- -CCUGCUCCU------UCGCUa-UGGCuaCCUgg -5'
13954 5' -52.2 NC_003521.1 + 111198 0.71 0.94386
Target:  5'- cGGACGGuGGGcugGGCGAUggcGCCGGaaagUGGGCg -3'
miRNA:   3'- -CCUGCU-CCU---UCGCUA---UGGCU----ACCUGg -5'
13954 5' -52.2 NC_003521.1 + 216257 0.71 0.948146
Target:  5'- uGGACGAGGAGGCc--GCCGAguaguagcGCCa -3'
miRNA:   3'- -CCUGCUCCUUCGcuaUGGCUacc-----UGG- -5'
13954 5' -52.2 NC_003521.1 + 63875 0.71 0.951813
Target:  5'- uGGACGAGGcGGCGc-GCCGGgagcugcagcaguUGGGCa -3'
miRNA:   3'- -CCUGCUCCuUCGCuaUGGCU-------------ACCUGg -5'
13954 5' -52.2 NC_003521.1 + 115753 0.71 0.956053
Target:  5'- aGGuccuCGGGGAAGgGAUcagaagGCCGGUGuGACg -3'
miRNA:   3'- -CCu---GCUCCUUCgCUA------UGGCUAC-CUGg -5'
13954 5' -52.2 NC_003521.1 + 43435 0.71 0.956053
Target:  5'- cGACGAGGAGGCGGcGgCGGcccUGGAa- -3'
miRNA:   3'- cCUGCUCCUUCGCUaUgGCU---ACCUgg -5'
13954 5' -52.2 NC_003521.1 + 217272 0.7 0.958615
Target:  5'- cGGACGAGGAgcaGGCGcugGCCaccaccaccgacagGGUGGugACCa -3'
miRNA:   3'- -CCUGCUCCU---UCGCua-UGG--------------CUACC--UGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.