miRNA display CGI


Results 61 - 80 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13954 5' -52.2 NC_003521.1 + 98842 0.72 0.919032
Target:  5'- cGGCGAGGAGGUGAUGgUGGuguUGGuACUg -3'
miRNA:   3'- cCUGCUCCUUCGCUAUgGCU---ACC-UGG- -5'
13954 5' -52.2 NC_003521.1 + 117730 0.72 0.929647
Target:  5'- cGACGuGGGAGCGGUACCcuuacGAcGGAgCu -3'
miRNA:   3'- cCUGCuCCUUCGCUAUGG-----CUaCCUgG- -5'
13954 5' -52.2 NC_003521.1 + 134506 0.7 0.959681
Target:  5'- cGGAUGAGGcAGGCGAUGCgcac-GGCCg -3'
miRNA:   3'- -CCUGCUCC-UUCGCUAUGgcuacCUGG- -5'
13954 5' -52.2 NC_003521.1 + 49088 0.7 0.962095
Target:  5'- cGGACG-GGggGCGAUAUCcacaaagugcgcguGGUG-ACCg -3'
miRNA:   3'- -CCUGCuCCuuCGCUAUGG--------------CUACcUGG- -5'
13954 5' -52.2 NC_003521.1 + 91867 0.7 0.963098
Target:  5'- cGGACcAGGAcGGCGGcGgCGGUGcGACCa -3'
miRNA:   3'- -CCUGcUCCU-UCGCUaUgGCUAC-CUGG- -5'
13954 5' -52.2 NC_003521.1 + 87385 0.7 0.964406
Target:  5'- aGGACGAggcggcGGAGGUGAcGCCGAcgcucacgcccaggGGAUCg -3'
miRNA:   3'- -CCUGCU------CCUUCGCUaUGGCUa-------------CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 133482 0.7 0.966307
Target:  5'- aGGuCGAGGAucaccuGGCGccgcUGCUGcgGGGCCc -3'
miRNA:   3'- -CCuGCUCCU------UCGCu---AUGGCuaCCUGG- -5'
13954 5' -52.2 NC_003521.1 + 88058 0.7 0.966307
Target:  5'- cGGAUGAGGucGCGGUGgucggcggcgcCCGugaccacGGGCCa -3'
miRNA:   3'- -CCUGCUCCuuCGCUAU-----------GGCua-----CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 146159 0.7 0.972125
Target:  5'- -cGCGAGGAgAGCGA----GGUGGGCCg -3'
miRNA:   3'- ccUGCUCCU-UCGCUauggCUACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 91583 0.69 0.974745
Target:  5'- gGGGCGGuguguGGGucacgaGGUGCCGAUGGGCg -3'
miRNA:   3'- -CCUGCU-----CCUucg---CUAUGGCUACCUGg -5'
13954 5' -52.2 NC_003521.1 + 217272 0.7 0.958615
Target:  5'- cGGACGAGGAgcaGGCGcugGCCaccaccaccgacagGGUGGugACCa -3'
miRNA:   3'- -CCUGCUCCU---UCGCua-UGG--------------CUACC--UGG- -5'
13954 5' -52.2 NC_003521.1 + 6067 0.71 0.956053
Target:  5'- cGACGAagGGAAuGCGAcgGCCGGUGcGGCg -3'
miRNA:   3'- cCUGCU--CCUU-CGCUa-UGGCUAC-CUGg -5'
13954 5' -52.2 NC_003521.1 + 131104 0.71 0.93935
Target:  5'- cGGACGGcGggGCGGcgcggcUGCCGGgaagGGACa -3'
miRNA:   3'- -CCUGCUcCuuCGCU------AUGGCUa---CCUGg -5'
13954 5' -52.2 NC_003521.1 + 170176 0.71 0.93935
Target:  5'- uGGuCGAcuucGGAgcGGUGGUGCCGGUGGAg- -3'
miRNA:   3'- -CCuGCU----CCU--UCGCUAUGGCUACCUgg -5'
13954 5' -52.2 NC_003521.1 + 43629 0.71 0.94386
Target:  5'- aGGACGAGGAggaggcGGCGGccGCCGccGGAg- -3'
miRNA:   3'- -CCUGCUCCU------UCGCUa-UGGCuaCCUgg -5'
13954 5' -52.2 NC_003521.1 + 111198 0.71 0.94386
Target:  5'- cGGACGGuGGGcugGGCGAUggcGCCGGaaagUGGGCg -3'
miRNA:   3'- -CCUGCU-CCU---UCGCUA---UGGCU----ACCUGg -5'
13954 5' -52.2 NC_003521.1 + 216257 0.71 0.948146
Target:  5'- uGGACGAGGAGGCc--GCCGAguaguagcGCCa -3'
miRNA:   3'- -CCUGCUCCUUCGcuaUGGCUacc-----UGG- -5'
13954 5' -52.2 NC_003521.1 + 63875 0.71 0.951813
Target:  5'- uGGACGAGGcGGCGc-GCCGGgagcugcagcaguUGGGCa -3'
miRNA:   3'- -CCUGCUCCuUCGCuaUGGCU-------------ACCUGg -5'
13954 5' -52.2 NC_003521.1 + 115753 0.71 0.956053
Target:  5'- aGGuccuCGGGGAAGgGAUcagaagGCCGGUGuGACg -3'
miRNA:   3'- -CCu---GCUCCUUCgCUA------UGGCUAC-CUGg -5'
13954 5' -52.2 NC_003521.1 + 43435 0.71 0.956053
Target:  5'- cGACGAGGAGGCGGcGgCGGcccUGGAa- -3'
miRNA:   3'- cCUGCUCCUUCGCUaUgGCU---ACCUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.