miRNA display CGI


Results 61 - 80 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13954 5' -52.2 NC_003521.1 + 43521 0.71 0.94386
Target:  5'- uGACGcAGGAuGGCGAUgagGCgGAUGGAgCg -3'
miRNA:   3'- cCUGC-UCCU-UCGCUA---UGgCUACCUgG- -5'
13954 5' -52.2 NC_003521.1 + 63325 0.71 0.948146
Target:  5'- -uACGGGGucGCGGUcgucgccaggGCCGAcgGGGCCu -3'
miRNA:   3'- ccUGCUCCuuCGCUA----------UGGCUa-CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 75956 0.71 0.948146
Target:  5'- cGGACGGGGGcuggaccGCGGUGCCGgcGuGAUg -3'
miRNA:   3'- -CCUGCUCCUu------CGCUAUGGCuaC-CUGg -5'
13954 5' -52.2 NC_003521.1 + 216257 0.71 0.948146
Target:  5'- uGGACGAGGAGGCc--GCCGAguaguagcGCCa -3'
miRNA:   3'- -CCUGCUCCUUCGcuaUGGCUacc-----UGG- -5'
13954 5' -52.2 NC_003521.1 + 63875 0.71 0.951813
Target:  5'- uGGACGAGGcGGCGc-GCCGGgagcugcagcaguUGGGCa -3'
miRNA:   3'- -CCUGCUCCuUCGCuaUGGCU-------------ACCUGg -5'
13954 5' -52.2 NC_003521.1 + 105802 0.71 0.952209
Target:  5'- aGGACGAGGAcacgGGCGcgAC--AUGGAgCCa -3'
miRNA:   3'- -CCUGCUCCU----UCGCuaUGgcUACCU-GG- -5'
13954 5' -52.2 NC_003521.1 + 150161 0.71 0.952209
Target:  5'- cGGAgGAGGGgugGGCGcgGgCGAUGGAa- -3'
miRNA:   3'- -CCUgCUCCU---UCGCuaUgGCUACCUgg -5'
13954 5' -52.2 NC_003521.1 + 123091 0.71 0.952209
Target:  5'- aGGACGAcgacGGuAGCGGcggcgugucgcUGCCGcgGGACUc -3'
miRNA:   3'- -CCUGCU----CCuUCGCU-----------AUGGCuaCCUGG- -5'
13954 5' -52.2 NC_003521.1 + 41319 0.71 0.955679
Target:  5'- aGGuuGAGGAaggcuucGGUGGUACgGAUGG-CCu -3'
miRNA:   3'- -CCugCUCCU-------UCGCUAUGgCUACCuGG- -5'
13954 5' -52.2 NC_003521.1 + 115753 0.71 0.956053
Target:  5'- aGGuccuCGGGGAAGgGAUcagaagGCCGGUGuGACg -3'
miRNA:   3'- -CCu---GCUCCUUCgCUA------UGGCUAC-CUGg -5'
13954 5' -52.2 NC_003521.1 + 43435 0.71 0.956053
Target:  5'- cGACGAGGAGGCGGcGgCGGcccUGGAa- -3'
miRNA:   3'- cCUGCUCCUUCGCUaUgGCU---ACCUgg -5'
13954 5' -52.2 NC_003521.1 + 6067 0.71 0.956053
Target:  5'- cGACGAagGGAAuGCGAcgGCCGGUGcGGCg -3'
miRNA:   3'- cCUGCU--CCUU-CGCUa-UGGCUAC-CUGg -5'
13954 5' -52.2 NC_003521.1 + 204088 0.71 0.956053
Target:  5'- cGACGAGGgcGuCGcgGCgGAgucaGGACCg -3'
miRNA:   3'- cCUGCUCCuuC-GCuaUGgCUa---CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 75833 0.71 0.956053
Target:  5'- aGGACGAGGAcaggagggcgcuGGCGuagccGCCGccGGcGCCg -3'
miRNA:   3'- -CCUGCUCCU------------UCGCua---UGGCuaCC-UGG- -5'
13954 5' -52.2 NC_003521.1 + 142852 0.71 0.956053
Target:  5'- aGGCGGGGAGGCGGgggcgGCCacGgcGGGCa -3'
miRNA:   3'- cCUGCUCCUUCGCUa----UGG--CuaCCUGg -5'
13954 5' -52.2 NC_003521.1 + 217272 0.7 0.958615
Target:  5'- cGGACGAGGAgcaGGCGcugGCCaccaccaccgacagGGUGGugACCa -3'
miRNA:   3'- -CCUGCUCCU---UCGCua-UGG--------------CUACC--UGG- -5'
13954 5' -52.2 NC_003521.1 + 134506 0.7 0.959681
Target:  5'- cGGAUGAGGcAGGCGAUGCgcac-GGCCg -3'
miRNA:   3'- -CCUGCUCC-UUCGCUAUGgcuacCUGG- -5'
13954 5' -52.2 NC_003521.1 + 32005 0.7 0.959681
Target:  5'- cGGuCGAGGcGGCGGaGgCGGUGG-CCg -3'
miRNA:   3'- -CCuGCUCCuUCGCUaUgGCUACCuGG- -5'
13954 5' -52.2 NC_003521.1 + 55360 0.7 0.959681
Target:  5'- cGGGUGcGGAGGUGAUcGCCGAgcgGGugCg -3'
miRNA:   3'- -CCUGCuCCUUCGCUA-UGGCUa--CCugG- -5'
13954 5' -52.2 NC_003521.1 + 49088 0.7 0.962095
Target:  5'- cGGACG-GGggGCGAUAUCcacaaagugcgcguGGUG-ACCg -3'
miRNA:   3'- -CCUGCuCCuuCGCUAUGG--------------CUACcUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.