Results 1 - 20 of 258 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13954 | 5' | -52.2 | NC_003521.1 | + | 24558 | 1.14 | 0.006141 |
Target: 5'- gGGACGAGGAAGCGAUACCGAUGGACCu -3' miRNA: 3'- -CCUGCUCCUUCGCUAUGGCUACCUGG- -5' |
|||||||
13954 | 5' | -52.2 | NC_003521.1 | + | 173416 | 0.85 | 0.348835 |
Target: 5'- cGugGAGGggGCGcUGCUGGUGGugCa -3' miRNA: 3'- cCugCUCCuuCGCuAUGGCUACCugG- -5' |
|||||||
13954 | 5' | -52.2 | NC_003521.1 | + | 100601 | 0.83 | 0.396521 |
Target: 5'- uGGACGAGGcGGCGAagcgucucuugGCCGggGGACCu -3' miRNA: 3'- -CCUGCUCCuUCGCUa----------UGGCuaCCUGG- -5' |
|||||||
13954 | 5' | -52.2 | NC_003521.1 | + | 132911 | 0.83 | 0.413323 |
Target: 5'- aGACGAGGAAGCaGAaccGCCGGUGGcGCCg -3' miRNA: 3'- cCUGCUCCUUCG-CUa--UGGCUACC-UGG- -5' |
|||||||
13954 | 5' | -52.2 | NC_003521.1 | + | 91920 | 0.82 | 0.466246 |
Target: 5'- aGGACGGcGGcGGCGAUG-CGGUGGACCc -3' miRNA: 3'- -CCUGCU-CCuUCGCUAUgGCUACCUGG- -5' |
|||||||
13954 | 5' | -52.2 | NC_003521.1 | + | 11962 | 0.81 | 0.512901 |
Target: 5'- cGGACGAGGAA-UGA-GCCGGUGGugCa -3' miRNA: 3'- -CCUGCUCCUUcGCUaUGGCUACCugG- -5' |
|||||||
13954 | 5' | -52.2 | NC_003521.1 | + | 105157 | 0.78 | 0.660977 |
Target: 5'- aGGACGAGGuGGUGAcgacgccGCCGAcgcUGGGCCc -3' miRNA: 3'- -CCUGCUCCuUCGCUa------UGGCU---ACCUGG- -5' |
|||||||
13954 | 5' | -52.2 | NC_003521.1 | + | 224179 | 0.77 | 0.729792 |
Target: 5'- aGGACGAGGAGGCGGa--CGAUGaaGACg -3' miRNA: 3'- -CCUGCUCCUUCGCUaugGCUAC--CUGg -5' |
|||||||
13954 | 5' | -52.2 | NC_003521.1 | + | 176924 | 0.77 | 0.739368 |
Target: 5'- uGGGCGGGGGucguggGGCGGUcaGCCaaGUGGGCCa -3' miRNA: 3'- -CCUGCUCCU------UCGCUA--UGGc-UACCUGG- -5' |
|||||||
13954 | 5' | -52.2 | NC_003521.1 | + | 39079 | 0.76 | 0.758243 |
Target: 5'- uGGACGAGGGuuGCGGaguUACCaGUGGcACCg -3' miRNA: 3'- -CCUGCUCCUu-CGCU---AUGGcUACC-UGG- -5' |
|||||||
13954 | 5' | -52.2 | NC_003521.1 | + | 49042 | 0.76 | 0.766602 |
Target: 5'- cGGACGAcagcauguugGGAGGUGcgGacaggacCCGGUGGACCg -3' miRNA: 3'- -CCUGCU----------CCUUCGCuaU-------GGCUACCUGG- -5' |
|||||||
13954 | 5' | -52.2 | NC_003521.1 | + | 240033 | 0.76 | 0.767525 |
Target: 5'- cGGCGGGGcgccGGGCGGUccuccGCCGAUGGcGCCu -3' miRNA: 3'- cCUGCUCC----UUCGCUA-----UGGCUACC-UGG- -5' |
|||||||
13954 | 5' | -52.2 | NC_003521.1 | + | 118718 | 0.76 | 0.767525 |
Target: 5'- uGGGCGAGGGGcGCGGcACCGGcacGGGCUg -3' miRNA: 3'- -CCUGCUCCUU-CGCUaUGGCUa--CCUGG- -5' |
|||||||
13954 | 5' | -52.2 | NC_003521.1 | + | 201282 | 0.76 | 0.767525 |
Target: 5'- cGGCGGGGcgccGGGCGGUccuccGCCGAUGGcGCCu -3' miRNA: 3'- cCUGCUCC----UUCGCUA-----UGGCUACC-UGG- -5' |
|||||||
13954 | 5' | -52.2 | NC_003521.1 | + | 6252 | 0.76 | 0.776692 |
Target: 5'- cGACGGGGAcGGCGAUAgCG-UGGGCa -3' miRNA: 3'- cCUGCUCCU-UCGCUAUgGCuACCUGg -5' |
|||||||
13954 | 5' | -52.2 | NC_003521.1 | + | 4949 | 0.75 | 0.794647 |
Target: 5'- gGGACGGGGGGgaccgcGCGAcgucGCCGGcgGGACCu -3' miRNA: 3'- -CCUGCUCCUU------CGCUa---UGGCUa-CCUGG- -5' |
|||||||
13954 | 5' | -52.2 | NC_003521.1 | + | 151972 | 0.75 | 0.812041 |
Target: 5'- aGGACGAGGAccacgucuucAGCcuGAaGCUGAcGGACCg -3' miRNA: 3'- -CCUGCUCCU----------UCG--CUaUGGCUaCCUGG- -5' |
|||||||
13954 | 5' | -52.2 | NC_003521.1 | + | 171346 | 0.75 | 0.820507 |
Target: 5'- cGGGCGGGGAGGCGG---CGGUGGcACa -3' miRNA: 3'- -CCUGCUCCUUCGCUaugGCUACC-UGg -5' |
|||||||
13954 | 5' | -52.2 | NC_003521.1 | + | 142625 | 0.75 | 0.820507 |
Target: 5'- uGGAgGAGGcGGCGGcgGCCGcgGcGGCCg -3' miRNA: 3'- -CCUgCUCCuUCGCUa-UGGCuaC-CUGG- -5' |
|||||||
13954 | 5' | -52.2 | NC_003521.1 | + | 82753 | 0.75 | 0.82881 |
Target: 5'- gGGACGAGaucacGCGcgACCGgcGGGCCg -3' miRNA: 3'- -CCUGCUCcuu--CGCuaUGGCuaCCUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home