miRNA display CGI


Results 1 - 20 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13954 5' -52.2 NC_003521.1 + 172896 0.74 0.860244
Target:  5'- -aGCGGGGgcGCGugaggACCGAggacgUGGACCg -3'
miRNA:   3'- ccUGCUCCuuCGCua---UGGCU-----ACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 24558 1.14 0.006141
Target:  5'- gGGACGAGGAAGCGAUACCGAUGGACCu -3'
miRNA:   3'- -CCUGCUCCUUCGCUAUGGCUACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 132911 0.83 0.413323
Target:  5'- aGACGAGGAAGCaGAaccGCCGGUGGcGCCg -3'
miRNA:   3'- cCUGCUCCUUCG-CUa--UGGCUACC-UGG- -5'
13954 5' -52.2 NC_003521.1 + 142625 0.75 0.820507
Target:  5'- uGGAgGAGGcGGCGGcgGCCGcgGcGGCCg -3'
miRNA:   3'- -CCUgCUCCuUCGCUa-UGGCuaC-CUGG- -5'
13954 5' -52.2 NC_003521.1 + 31590 0.75 0.82881
Target:  5'- aGGCGAGGccGCGAUGCUGcgcaagGGACUc -3'
miRNA:   3'- cCUGCUCCuuCGCUAUGGCua----CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 11962 0.81 0.512901
Target:  5'- cGGACGAGGAA-UGA-GCCGGUGGugCa -3'
miRNA:   3'- -CCUGCUCCUUcGCUaUGGCUACCugG- -5'
13954 5' -52.2 NC_003521.1 + 4949 0.75 0.794647
Target:  5'- gGGACGGGGGGgaccgcGCGAcgucGCCGGcgGGACCu -3'
miRNA:   3'- -CCUGCUCCUU------CGCUa---UGGCUa-CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 171346 0.75 0.820507
Target:  5'- cGGGCGGGGAGGCGG---CGGUGGcACa -3'
miRNA:   3'- -CCUGCUCCUUCGCUaugGCUACC-UGg -5'
13954 5' -52.2 NC_003521.1 + 182047 0.74 0.860244
Target:  5'- -cACGAGGAucGCGAcUACCGGgcgcugUGGGCCu -3'
miRNA:   3'- ccUGCUCCUu-CGCU-AUGGCU------ACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 71466 0.74 0.867625
Target:  5'- gGGACGAGGcggauGCGAauUCGAggaggUGGACCu -3'
miRNA:   3'- -CCUGCUCCuu---CGCUauGGCU-----ACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 177469 0.66 0.998232
Target:  5'- cGGCGAcauGGGA-CGAUAUCGAcgauaGGGCCg -3'
miRNA:   3'- cCUGCU---CCUUcGCUAUGGCUa----CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 201282 0.76 0.767525
Target:  5'- cGGCGGGGcgccGGGCGGUccuccGCCGAUGGcGCCu -3'
miRNA:   3'- cCUGCUCC----UUCGCUA-----UGGCUACC-UGG- -5'
13954 5' -52.2 NC_003521.1 + 224179 0.77 0.729792
Target:  5'- aGGACGAGGAGGCGGa--CGAUGaaGACg -3'
miRNA:   3'- -CCUGCUCCUUCGCUaugGCUAC--CUGg -5'
13954 5' -52.2 NC_003521.1 + 138425 0.74 0.852666
Target:  5'- aGGcGCGAGGAgacGGCGAaGCCGccGGGCa -3'
miRNA:   3'- -CC-UGCUCCU---UCGCUaUGGCuaCCUGg -5'
13954 5' -52.2 NC_003521.1 + 4749 0.74 0.852666
Target:  5'- cGGACGGGGGAGgaCGAUaaaagAUCGG-GGGCCg -3'
miRNA:   3'- -CCUGCUCCUUC--GCUA-----UGGCUaCCUGG- -5'
13954 5' -52.2 NC_003521.1 + 6252 0.76 0.776692
Target:  5'- cGACGGGGAcGGCGAUAgCG-UGGGCa -3'
miRNA:   3'- cCUGCUCCU-UCGCUAUgGCuACCUGg -5'
13954 5' -52.2 NC_003521.1 + 114041 0.74 0.867625
Target:  5'- aGGAacCGAGGAuggagacGCGGUGCCGcggcaGGGCCa -3'
miRNA:   3'- -CCU--GCUCCUu------CGCUAUGGCua---CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 191448 0.73 0.874804
Target:  5'- aGGACGAGGGAGaCGAggaacaggauCUGGagagGGGCCg -3'
miRNA:   3'- -CCUGCUCCUUC-GCUau--------GGCUa---CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 151972 0.75 0.812041
Target:  5'- aGGACGAGGAccacgucuucAGCcuGAaGCUGAcGGACCg -3'
miRNA:   3'- -CCUGCUCCU----------UCG--CUaUGGCUaCCUGG- -5'
13954 5' -52.2 NC_003521.1 + 180406 0.75 0.82881
Target:  5'- cGACGAGGuGGCGcUGCUccUGGACCu -3'
miRNA:   3'- cCUGCUCCuUCGCuAUGGcuACCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.