miRNA display CGI


Results 41 - 60 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13954 5' -52.2 NC_003521.1 + 173504 0.73 0.895079
Target:  5'- uGGGCGAGGAuGUcaAUACCuGAggGGACCa -3'
miRNA:   3'- -CCUGCUCCUuCGc-UAUGG-CUa-CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 227087 0.73 0.901403
Target:  5'- cGGGCGAGGAccccauGGCGcuGUACCGucaGGuCCu -3'
miRNA:   3'- -CCUGCUCCU------UCGC--UAUGGCua-CCuGG- -5'
13954 5' -52.2 NC_003521.1 + 48938 0.72 0.913382
Target:  5'- cGGCGGGGAgggagaAGCGGUGCaGGUGGAg- -3'
miRNA:   3'- cCUGCUCCU------UCGCUAUGgCUACCUgg -5'
13954 5' -52.2 NC_003521.1 + 151268 0.72 0.913382
Target:  5'- cGACGAGG-AGCGcgACgaGUGGGCCc -3'
miRNA:   3'- cCUGCUCCuUCGCuaUGgcUACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 50109 0.72 0.919032
Target:  5'- uGGACGAGGccGAGCGGcagcagGCgcaGGUGGACg -3'
miRNA:   3'- -CCUGCUCC--UUCGCUa-----UGg--CUACCUGg -5'
13954 5' -52.2 NC_003521.1 + 72982 0.72 0.919032
Target:  5'- aGAcCGAGGAGGCGuggaucGCCGA-GGACg -3'
miRNA:   3'- cCU-GCUCCUUCGCua----UGGCUaCCUGg -5'
13954 5' -52.2 NC_003521.1 + 91365 0.72 0.919032
Target:  5'- cGGugGGGGAGGgG--GCCGAaccccGGGCCc -3'
miRNA:   3'- -CCugCUCCUUCgCuaUGGCUa----CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 98842 0.72 0.919032
Target:  5'- cGGCGAGGAGGUGAUGgUGGuguUGGuACUg -3'
miRNA:   3'- cCUGCUCCUUCGCUAUgGCU---ACC-UGG- -5'
13954 5' -52.2 NC_003521.1 + 154755 0.72 0.915669
Target:  5'- uGGAUGcuGGAggucuugccggcgccGGCGGUGCCGGUG-ACCa -3'
miRNA:   3'- -CCUGCu-CCU---------------UCGCUAUGGCUACcUGG- -5'
13954 5' -52.2 NC_003521.1 + 117730 0.72 0.929647
Target:  5'- cGACGuGGGAGCGGUACCcuuacGAcGGAgCu -3'
miRNA:   3'- cCUGCuCCUUCGCUAUGG-----CUaCCUgG- -5'
13954 5' -52.2 NC_003521.1 + 92609 0.72 0.907505
Target:  5'- aGGACGGaggguuccGGGAGCGAggcggGCgGAUGGGauCCg -3'
miRNA:   3'- -CCUGCU--------CCUUCGCUa----UGgCUACCU--GG- -5'
13954 5' -52.2 NC_003521.1 + 148777 0.72 0.913382
Target:  5'- ---gGAGGAGGCGcaGCCGcggcAUGGGCCu -3'
miRNA:   3'- ccugCUCCUUCGCuaUGGC----UACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 111198 0.71 0.94386
Target:  5'- cGGACGGuGGGcugGGCGAUggcGCCGGaaagUGGGCg -3'
miRNA:   3'- -CCUGCU-CCU---UCGCUA---UGGCU----ACCUGg -5'
13954 5' -52.2 NC_003521.1 + 216257 0.71 0.948146
Target:  5'- uGGACGAGGAGGCc--GCCGAguaguagcGCCa -3'
miRNA:   3'- -CCUGCUCCUUCGcuaUGGCUacc-----UGG- -5'
13954 5' -52.2 NC_003521.1 + 63875 0.71 0.951813
Target:  5'- uGGACGAGGcGGCGc-GCCGGgagcugcagcaguUGGGCa -3'
miRNA:   3'- -CCUGCUCCuUCGCuaUGGCU-------------ACCUGg -5'
13954 5' -52.2 NC_003521.1 + 115753 0.71 0.956053
Target:  5'- aGGuccuCGGGGAAGgGAUcagaagGCCGGUGuGACg -3'
miRNA:   3'- -CCu---GCUCCUUCgCUA------UGGCUAC-CUGg -5'
13954 5' -52.2 NC_003521.1 + 43435 0.71 0.956053
Target:  5'- cGACGAGGAGGCGGcGgCGGcccUGGAa- -3'
miRNA:   3'- cCUGCUCCUUCGCUaUgGCU---ACCUgg -5'
13954 5' -52.2 NC_003521.1 + 43629 0.71 0.94386
Target:  5'- aGGACGAGGAggaggcGGCGGccGCCGccGGAg- -3'
miRNA:   3'- -CCUGCUCCU------UCGCUa-UGGCuaCCUgg -5'
13954 5' -52.2 NC_003521.1 + 6067 0.71 0.956053
Target:  5'- cGACGAagGGAAuGCGAcgGCCGGUGcGGCg -3'
miRNA:   3'- cCUGCU--CCUU-CGCUa-UGGCUAC-CUGg -5'
13954 5' -52.2 NC_003521.1 + 131104 0.71 0.93935
Target:  5'- cGGACGGcGggGCGGcgcggcUGCCGGgaagGGACa -3'
miRNA:   3'- -CCUGCUcCuuCGCU------AUGGCUa---CCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.