miRNA display CGI


Results 21 - 40 of 258 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13954 5' -52.2 NC_003521.1 + 180406 0.75 0.82881
Target:  5'- cGACGAGGuGGCGcUGCUccUGGACCu -3'
miRNA:   3'- cCUGCUCCuUCGCuAUGGcuACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 151972 0.75 0.812041
Target:  5'- aGGACGAGGAccacgucuucAGCcuGAaGCUGAcGGACCg -3'
miRNA:   3'- -CCUGCUCCU----------UCG--CUaUGGCUaCCUGG- -5'
13954 5' -52.2 NC_003521.1 + 163884 0.75 0.82881
Target:  5'- -cGCGAcGGAGGCaGGUGCCGAcGGugCg -3'
miRNA:   3'- ccUGCU-CCUUCG-CUAUGGCUaCCugG- -5'
13954 5' -52.2 NC_003521.1 + 30788 0.74 0.867625
Target:  5'- uGGAUGuGGgcGCGGUagcgcACCGA-GGGCCc -3'
miRNA:   3'- -CCUGCuCCuuCGCUA-----UGGCUaCCUGG- -5'
13954 5' -52.2 NC_003521.1 + 117859 0.74 0.836137
Target:  5'- cGACGAGGAccugaguuuccccGGCGAgGCCGAgcacGGCCg -3'
miRNA:   3'- cCUGCUCCU-------------UCGCUaUGGCUac--CUGG- -5'
13954 5' -52.2 NC_003521.1 + 138425 0.74 0.852666
Target:  5'- aGGcGCGAGGAgacGGCGAaGCCGccGGGCa -3'
miRNA:   3'- -CC-UGCUCCU---UCGCUaUGGCuaCCUGg -5'
13954 5' -52.2 NC_003521.1 + 114399 0.74 0.867625
Target:  5'- aGGACGcugauGGAGGCGAacaUGCCGGUGaGCa -3'
miRNA:   3'- -CCUGCu----CCUUCGCU---AUGGCUACcUGg -5'
13954 5' -52.2 NC_003521.1 + 71466 0.74 0.867625
Target:  5'- gGGACGAGGcggauGCGAauUCGAggaggUGGACCu -3'
miRNA:   3'- -CCUGCUCCuu---CGCUauGGCU-----ACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 114041 0.74 0.867625
Target:  5'- aGGAacCGAGGAuggagacGCGGUGCCGcggcaGGGCCa -3'
miRNA:   3'- -CCU--GCUCCUu------CGCUAUGGCua---CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 4749 0.74 0.852666
Target:  5'- cGGACGGGGGAGgaCGAUaaaagAUCGG-GGGCCg -3'
miRNA:   3'- -CCUGCUCCUUC--GCUA-----UGGCUaCCUGG- -5'
13954 5' -52.2 NC_003521.1 + 182047 0.74 0.860244
Target:  5'- -cACGAGGAucGCGAcUACCGGgcgcugUGGGCCu -3'
miRNA:   3'- ccUGCUCCUu-CGCU-AUGGCU------ACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 172896 0.74 0.860244
Target:  5'- -aGCGGGGgcGCGugaggACCGAggacgUGGACCg -3'
miRNA:   3'- ccUGCUCCuuCGCua---UGGCU-----ACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 91175 0.74 0.836942
Target:  5'- aGGGCGcaugcgccucuGGAAGCGGUACCGcgggcgcgucGUGGGCa -3'
miRNA:   3'- -CCUGCu----------CCUUCGCUAUGGC----------UACCUGg -5'
13954 5' -52.2 NC_003521.1 + 191448 0.73 0.874804
Target:  5'- aGGACGAGGGAGaCGAggaacaggauCUGGagagGGGCCg -3'
miRNA:   3'- -CCUGCUCCUUC-GCUau--------GGCUa---CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 58228 0.73 0.874804
Target:  5'- -aGCGAGGAcgaugaugauAGCGAgAUCGAggagGGACCg -3'
miRNA:   3'- ccUGCUCCU----------UCGCUaUGGCUa---CCUGG- -5'
13954 5' -52.2 NC_003521.1 + 229217 0.73 0.888536
Target:  5'- cGGACGAGGAGGacu--CCGA-GGACg -3'
miRNA:   3'- -CCUGCUCCUUCgcuauGGCUaCCUGg -5'
13954 5' -52.2 NC_003521.1 + 63151 0.73 0.881776
Target:  5'- gGGAUGGGGAguggccGGuCGGUACCGGgagGGAUg -3'
miRNA:   3'- -CCUGCUCCU------UC-GCUAUGGCUa--CCUGg -5'
13954 5' -52.2 NC_003521.1 + 221987 0.73 0.874804
Target:  5'- gGGACGGGGAGGgagaCGAcGCgGGUGGcggGCCg -3'
miRNA:   3'- -CCUGCUCCUUC----GCUaUGgCUACC---UGG- -5'
13954 5' -52.2 NC_003521.1 + 212890 0.73 0.901403
Target:  5'- cGGGCGAcGGggGUG---UCGGUGGACUc -3'
miRNA:   3'- -CCUGCU-CCuuCGCuauGGCUACCUGG- -5'
13954 5' -52.2 NC_003521.1 + 173504 0.73 0.895079
Target:  5'- uGGGCGAGGAuGUcaAUACCuGAggGGACCa -3'
miRNA:   3'- -CCUGCUCCUuCGc-UAUGG-CUa-CCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.