Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13956 | 3' | -55.6 | NC_003521.1 | + | 92076 | 0.78 | 0.42229 |
Target: 5'- gCGG-ACCGggggucGGGGGGUGCGCAGGgcGGu -3' miRNA: 3'- -GCCaUGGU------UCCCCUACGCGUCCuaCU- -5' |
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13956 | 3' | -55.6 | NC_003521.1 | + | 228981 | 0.66 | 0.971581 |
Target: 5'- aGGUGCgc--GGGcgGCGCAGGAc-- -3' miRNA: 3'- gCCAUGguucCCCuaCGCGUCCUacu -5' |
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13956 | 3' | -55.6 | NC_003521.1 | + | 35196 | 0.66 | 0.971581 |
Target: 5'- uCGGacCCAgggacAGGGGgcGCGCGGGucgGAu -3' miRNA: 3'- -GCCauGGU-----UCCCCuaCGCGUCCua-CU- -5' |
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13956 | 3' | -55.6 | NC_003521.1 | + | 119476 | 0.66 | 0.962471 |
Target: 5'- ---aGCCGcGcGGGgcGUGCAGGGUGAa -3' miRNA: 3'- gccaUGGUuC-CCCuaCGCGUCCUACU- -5' |
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13956 | 3' | -55.6 | NC_003521.1 | + | 193282 | 0.67 | 0.947417 |
Target: 5'- gGGUGCCGggacGGGcgucGGAgucgGCGCGgGGGUGGu -3' miRNA: 3'- gCCAUGGU----UCC----CCUa---CGCGU-CCUACU- -5' |
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13956 | 3' | -55.6 | NC_003521.1 | + | 202124 | 0.67 | 0.939039 |
Target: 5'- aGGUACCGGgacgggcuugucuucGGGGAUGgcgccgagccagacCGCAGGAcgcgGAa -3' miRNA: 3'- gCCAUGGUU---------------CCCCUAC--------------GCGUCCUa---CU- -5' |
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13956 | 3' | -55.6 | NC_003521.1 | + | 74627 | 0.67 | 0.933818 |
Target: 5'- ---cGCCAacagcGGGGuGGUGCGCGGGAcccUGGa -3' miRNA: 3'- gccaUGGU-----UCCC-CUACGCGUCCU---ACU- -5' |
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13956 | 3' | -55.6 | NC_003521.1 | + | 110451 | 0.67 | 0.928834 |
Target: 5'- uGGUGcCCAGGGGGAggaauuccUGCuccagGCAGGG-GAu -3' miRNA: 3'- gCCAU-GGUUCCCCU--------ACG-----CGUCCUaCU- -5' |
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13956 | 3' | -55.6 | NC_003521.1 | + | 214982 | 0.69 | 0.880874 |
Target: 5'- gCGGcgGCCAGGGGGGUGCGagcCAGcGGc-- -3' miRNA: 3'- -GCCa-UGGUUCCCCUACGC---GUC-CUacu -5' |
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13956 | 3' | -55.6 | NC_003521.1 | + | 103097 | 0.7 | 0.851767 |
Target: 5'- gGGaUGCgAAGGGGGcggauagGaCGCGGGGUGAg -3' miRNA: 3'- gCC-AUGgUUCCCCUa------C-GCGUCCUACU- -5' |
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13956 | 3' | -55.6 | NC_003521.1 | + | 103053 | 0.7 | 0.844004 |
Target: 5'- aGGUGCugcagaCAGGGcGGGUGCGCGGGc-GAg -3' miRNA: 3'- gCCAUG------GUUCC-CCUACGCGUCCuaCU- -5' |
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13956 | 3' | -55.6 | NC_003521.1 | + | 169048 | 0.74 | 0.620702 |
Target: 5'- uGGUcguCCGGGGGGAUGCGCAaGA-GAc -3' miRNA: 3'- gCCAu--GGUUCCCCUACGCGUcCUaCU- -5' |
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13956 | 3' | -55.6 | NC_003521.1 | + | 60697 | 0.72 | 0.757516 |
Target: 5'- gCGGgggACCcGGGGGcgGCGCGGGu--- -3' miRNA: 3'- -GCCa--UGGuUCCCCuaCGCGUCCuacu -5' |
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13956 | 3' | -55.6 | NC_003521.1 | + | 188671 | 0.72 | 0.757516 |
Target: 5'- gCGGUACCGucgcugacgggcGGGGGAUaCGCGGGucccGUGGc -3' miRNA: 3'- -GCCAUGGU------------UCCCCUAcGCGUCC----UACU- -5' |
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13956 | 3' | -55.6 | NC_003521.1 | + | 109726 | 0.71 | 0.775918 |
Target: 5'- aGGagGCCAGGuGGGAcuUGUGCAGGGUc- -3' miRNA: 3'- gCCa-UGGUUC-CCCU--ACGCGUCCUAcu -5' |
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13956 | 3' | -55.6 | NC_003521.1 | + | 652 | 0.71 | 0.784941 |
Target: 5'- aCGGgccCCGGGGGGAcGCGgAGGAgggGGg -3' miRNA: 3'- -GCCau-GGUUCCCCUaCGCgUCCUa--CU- -5' |
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13956 | 3' | -55.6 | NC_003521.1 | + | 31176 | 0.71 | 0.793832 |
Target: 5'- aCGGUAgUc-GGGGAUGCGguGGAUc- -3' miRNA: 3'- -GCCAUgGuuCCCCUACGCguCCUAcu -5' |
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13956 | 3' | -55.6 | NC_003521.1 | + | 237697 | 0.71 | 0.802585 |
Target: 5'- aCGGUACCGGGGcaGGcAUGCacacggGCuGGAUGAa -3' miRNA: 3'- -GCCAUGGUUCC--CC-UACG------CGuCCUACU- -5' |
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13956 | 3' | -55.6 | NC_003521.1 | + | 92525 | 0.66 | 0.971306 |
Target: 5'- cCGGUAgcggcagcggcacCCAGGGaGGGU-CGaCGGGAUGGg -3' miRNA: 3'- -GCCAU-------------GGUUCC-CCUAcGC-GUCCUACU- -5' |
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13956 | 3' | -55.6 | NC_003521.1 | + | 63133 | 0.74 | 0.620702 |
Target: 5'- uCGGUACCGGGaGGGAUGUcugagGCGGGGc-- -3' miRNA: 3'- -GCCAUGGUUC-CCCUACG-----CGUCCUacu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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