Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13956 | 3' | -55.6 | NC_003521.1 | + | 200115 | 0.71 | 0.78494 |
Target: 5'- aCGGgccCCGGGGGGAcGCGgAGGAgggGGg -3' miRNA: 3'- -GCCau-GGUUCCCCUaCGCgUCCUa--CU- -5' |
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13956 | 3' | -55.6 | NC_003521.1 | + | 42570 | 0.66 | 0.962471 |
Target: 5'- gCGGgGCCAaaaacaGGGGGAUGCGUaccgucugcgAGGGc-- -3' miRNA: 3'- -GCCaUGGU------UCCCCUACGCG----------UCCUacu -5' |
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13956 | 3' | -55.6 | NC_003521.1 | + | 166183 | 0.66 | 0.968151 |
Target: 5'- aCGGUGgCGGcGGuGGAgucggcccggcaGCGCGGGGUGGu -3' miRNA: 3'- -GCCAUgGUU-CC-CCUa-----------CGCGUCCUACU- -5' |
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13956 | 3' | -55.6 | NC_003521.1 | + | 92525 | 0.66 | 0.971306 |
Target: 5'- cCGGUAgcggcagcggcacCCAGGGaGGGU-CGaCGGGAUGGg -3' miRNA: 3'- -GCCAU-------------GGUUCC-CCUAcGC-GUCCUACU- -5' |
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13956 | 3' | -55.6 | NC_003521.1 | + | 77122 | 0.67 | 0.928833 |
Target: 5'- gCGGUcgccuCCGAGGacgaGGAcGCGCGGGAaGAg -3' miRNA: 3'- -GCCAu----GGUUCC----CCUaCGCGUCCUaCU- -5' |
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13956 | 3' | -55.6 | NC_003521.1 | + | 55351 | 0.67 | 0.928833 |
Target: 5'- aGGUgaucGCCGAGcGGGUGCGCcGGAg-- -3' miRNA: 3'- gCCA----UGGUUCcCCUACGCGuCCUacu -5' |
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13956 | 3' | -55.6 | NC_003521.1 | + | 120533 | 0.67 | 0.943108 |
Target: 5'- gCGGU-CCcGGGGGA-GCGCccgGGGAUa- -3' miRNA: 3'- -GCCAuGGuUCCCCUaCGCG---UCCUAcu -5' |
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13956 | 3' | -55.6 | NC_003521.1 | + | 25864 | 1.1 | 0.004517 |
Target: 5'- aCGGUACCAAGGGGAUGCGCAGGAUGAa -3' miRNA: 3'- -GCCAUGGUUCCCCUACGCGUCCUACU- -5' |
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13956 | 3' | -55.6 | NC_003521.1 | + | 63133 | 0.74 | 0.620702 |
Target: 5'- uCGGUACCGGGaGGGAUGUcugagGCGGGGc-- -3' miRNA: 3'- -GCCAUGGUUC-CCCUACG-----CGUCCUacu -5' |
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13956 | 3' | -55.6 | NC_003521.1 | + | 26528 | 0.66 | 0.959028 |
Target: 5'- cCGGUGCCu--GGGGUGCaGCAGcGcUGGc -3' miRNA: 3'- -GCCAUGGuucCCCUACG-CGUC-CuACU- -5' |
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13956 | 3' | -55.6 | NC_003521.1 | + | 132805 | 0.67 | 0.947417 |
Target: 5'- gCGGcACCGAGGGcGGUG-GUGGcGGUGAc -3' miRNA: 3'- -GCCaUGGUUCCC-CUACgCGUC-CUACU- -5' |
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13956 | 3' | -55.6 | NC_003521.1 | + | 233224 | 0.67 | 0.947417 |
Target: 5'- aCGGccuCCAuGGGGAUGagcuccaGCAGGAgcaGAg -3' miRNA: 3'- -GCCau-GGUuCCCCUACg------CGUCCUa--CU- -5' |
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13956 | 3' | -55.6 | NC_003521.1 | + | 153056 | 0.71 | 0.78494 |
Target: 5'- cCGGUGaCCGAGGcGGugcgcaagGCGCAGGAg-- -3' miRNA: 3'- -GCCAU-GGUUCC-CCua------CGCGUCCUacu -5' |
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13956 | 3' | -55.6 | NC_003521.1 | + | 143244 | 0.67 | 0.951504 |
Target: 5'- cCGGUGCgacaGAGaGGGGUGCGggcCAGGGaGAc -3' miRNA: 3'- -GCCAUGg---UUC-CCCUACGC---GUCCUaCU- -5' |
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13956 | 3' | -55.6 | NC_003521.1 | + | 183972 | 0.69 | 0.859341 |
Target: 5'- aGGgacGCgAGGGGGAauccGCGguGGGUGGa -3' miRNA: 3'- gCCa--UGgUUCCCCUa---CGCguCCUACU- -5' |
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13956 | 3' | -55.6 | NC_003521.1 | + | 146504 | 0.67 | 0.947417 |
Target: 5'- gCGGgucaaagACCAcGGGGGUGacgaugaugaGCAGGggGAu -3' miRNA: 3'- -GCCa------UGGUuCCCCUACg---------CGUCCuaCU- -5' |
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13956 | 3' | -55.6 | NC_003521.1 | + | 148799 | 0.66 | 0.955374 |
Target: 5'- cCGcGU-CCucGGGGAagGCGCGGGAgGAg -3' miRNA: 3'- -GC-CAuGGuuCCCCUa-CGCGUCCUaCU- -5' |
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13956 | 3' | -55.6 | NC_003521.1 | + | 17168 | 0.66 | 0.968151 |
Target: 5'- aCGGUgauuggaggcgcgGCCGAGGGGGUcgaggcgGCcGCGGGGa-- -3' miRNA: 3'- -GCCA-------------UGGUUCCCCUA-------CG-CGUCCUacu -5' |
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13956 | 3' | -55.6 | NC_003521.1 | + | 92717 | 0.69 | 0.86672 |
Target: 5'- gCGGgcaaGCCGAGcGGGGUGCGgGgaggcugggGGGUGAg -3' miRNA: 3'- -GCCa---UGGUUC-CCCUACGCgU---------CCUACU- -5' |
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13956 | 3' | -55.6 | NC_003521.1 | + | 239191 | 0.67 | 0.939039 |
Target: 5'- aGGUACCGGgacgggcuugucuucGGGGAUGgcgccgagccagacCGCAGGAcgcgGAa -3' miRNA: 3'- gCCAUGGUU---------------CCCCUAC--------------GCGUCCUa---CU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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