miRNA display CGI


Results 21 - 40 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13956 5' -61.4 NC_003521.1 + 28289 0.66 0.788301
Target:  5'- cCCgcUCCCCGCGGCgUGCUggaggaGgACAGCg -3'
miRNA:   3'- -GGacAGGGGCGCCG-GCGGa-----CgUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 151585 0.66 0.788301
Target:  5'- cCCUcGgacgccaCCCGCcuGGCCGCCuUGCGCGc- -3'
miRNA:   3'- -GGA-Cag-----GGGCG--CCGGCGG-ACGUGUug -5'
13956 5' -61.4 NC_003521.1 + 97781 0.66 0.787444
Target:  5'- gUCUcUCUCCGUGGUCGCCcGCgguagagACAGCc -3'
miRNA:   3'- -GGAcAGGGGCGCCGGCGGaCG-------UGUUG- -5'
13956 5' -61.4 NC_003521.1 + 102790 0.66 0.783142
Target:  5'- gCCUG-CCCgucuucaacuuCGUGGCCGacauggaccugcggCUGCGCGACg -3'
miRNA:   3'- -GGACaGGG-----------GCGCCGGCg-------------GACGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 201609 0.66 0.779679
Target:  5'- gCUGUCCCCGagcCCGCgCUGCuGCGGa -3'
miRNA:   3'- gGACAGGGGCgccGGCG-GACG-UGUUg -5'
13956 5' -61.4 NC_003521.1 + 222493 0.66 0.779679
Target:  5'- aCUgGUUCCUGCGGCCcaGCCgcgGuCAgGACa -3'
miRNA:   3'- gGA-CAGGGGCGCCGG--CGGa--C-GUgUUG- -5'
13956 5' -61.4 NC_003521.1 + 34993 0.66 0.779679
Target:  5'- --gGUCUCCGgGGCCaGCgaGCGCuuGCg -3'
miRNA:   3'- ggaCAGGGGCgCCGG-CGgaCGUGu-UG- -5'
13956 5' -61.4 NC_003521.1 + 166460 0.66 0.779679
Target:  5'- gCC-GUCgCCGCacuGGCCGUagccGCGCAGCa -3'
miRNA:   3'- -GGaCAGgGGCG---CCGGCGga--CGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 50282 0.66 0.779679
Target:  5'- gCCggGUCCgCCGCuGCUGCCgccGCACcuCg -3'
miRNA:   3'- -GGa-CAGG-GGCGcCGGCGGa--CGUGuuG- -5'
13956 5' -61.4 NC_003521.1 + 239706 0.66 0.779679
Target:  5'- gCUGUCCCCGagcCCGCgCUGCuGCGGa -3'
miRNA:   3'- gGACAGGGGCgccGGCG-GACG-UGUUg -5'
13956 5' -61.4 NC_003521.1 + 228967 0.66 0.779679
Target:  5'- aUCUGcgaCCUGCGGCUGCaCgacCACAACa -3'
miRNA:   3'- -GGACag-GGGCGCCGGCG-Gac-GUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 22592 0.66 0.779679
Target:  5'- cCCgugacgGcCCCUGCGGUCGCCUGaccuccguugccCGgGACa -3'
miRNA:   3'- -GGa-----CaGGGGCGCCGGCGGAC------------GUgUUG- -5'
13956 5' -61.4 NC_003521.1 + 42944 0.66 0.779679
Target:  5'- -----aUCCGCuGCCGCCUGCAgccCAGCg -3'
miRNA:   3'- ggacagGGGCGcCGGCGGACGU---GUUG- -5'
13956 5' -61.4 NC_003521.1 + 142352 0.66 0.779679
Target:  5'- gCCacggCCgCCGCGGCCGCCgccGCcuccucCAACg -3'
miRNA:   3'- -GGaca-GG-GGCGCCGGCGGa--CGu-----GUUG- -5'
13956 5' -61.4 NC_003521.1 + 112870 0.66 0.779679
Target:  5'- gCUGcUCCCGCGGCUGgCCg--ACGACg -3'
miRNA:   3'- gGACaGGGGCGCCGGC-GGacgUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 100123 0.66 0.779679
Target:  5'- --cGaCCCCGCGGCUGgcgguCCUGCGgGAa -3'
miRNA:   3'- ggaCaGGGGCGCCGGC-----GGACGUgUUg -5'
13956 5' -61.4 NC_003521.1 + 219319 0.66 0.77445
Target:  5'- aCCUGggCgCCGUGGCgUGCCUGUccguggcggugauccACGACc -3'
miRNA:   3'- -GGACa-GgGGCGCCG-GCGGACG---------------UGUUG- -5'
13956 5' -61.4 NC_003521.1 + 109860 0.66 0.770941
Target:  5'- gCCUGUgCUCGCuGGCCGagCUGgCGCAc- -3'
miRNA:   3'- -GGACAgGGGCG-CCGGCg-GAC-GUGUug -5'
13956 5' -61.4 NC_003521.1 + 144427 0.66 0.770941
Target:  5'- gCCUGUuggCCaCCGCGGaCgGUCUGUauuuauACAACg -3'
miRNA:   3'- -GGACA---GG-GGCGCC-GgCGGACG------UGUUG- -5'
13956 5' -61.4 NC_003521.1 + 164461 0.66 0.770941
Target:  5'- gCCgucacgGUCgCCGCuGCCGCC-GcCGCAGCc -3'
miRNA:   3'- -GGa-----CAGgGGCGcCGGCGGaC-GUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.