miRNA display CGI


Results 21 - 40 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13956 5' -61.4 NC_003521.1 + 16882 0.73 0.387185
Target:  5'- ---uUCCCCGCGGCCGCCUcgacccccucggccGCGCc-- -3'
miRNA:   3'- ggacAGGGGCGCCGGCGGA--------------CGUGuug -5'
13956 5' -61.4 NC_003521.1 + 190983 0.73 0.389534
Target:  5'- aCCgccaCCUgGaCGGCCGUCUGCACGGCg -3'
miRNA:   3'- -GGaca-GGGgC-GCCGGCGGACGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 18977 0.73 0.405435
Target:  5'- cCCUGgugguggacgCCCacaGCGGCCaGCUguUGCACAACg -3'
miRNA:   3'- -GGACa---------GGGg--CGCCGG-CGG--ACGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 114502 0.73 0.405435
Target:  5'- gCUGUCCgUCGUGGCCGCCgUGCcCAc- -3'
miRNA:   3'- gGACAGG-GGCGCCGGCGG-ACGuGUug -5'
13956 5' -61.4 NC_003521.1 + 219347 0.73 0.413537
Target:  5'- gCUUGUCCuuGUaGGCCGCCagcUGCACGc- -3'
miRNA:   3'- -GGACAGGggCG-CCGGCGG---ACGUGUug -5'
13956 5' -61.4 NC_003521.1 + 100266 0.72 0.43843
Target:  5'- gCUGUCgCCGCcGCCGCC-GCAgCAGCc -3'
miRNA:   3'- gGACAGgGGCGcCGGCGGaCGU-GUUG- -5'
13956 5' -61.4 NC_003521.1 + 104109 0.72 0.455493
Target:  5'- gCCUGgacgaggCCgagaCGCGGCC-CCUGUACAGCc -3'
miRNA:   3'- -GGACa------GGg---GCGCCGGcGGACGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 88944 0.71 0.481742
Target:  5'- uUUGUCCCCGagccgGGCCGCCgGCccacCGACc -3'
miRNA:   3'- gGACAGGGGCg----CCGGCGGaCGu---GUUG- -5'
13956 5' -61.4 NC_003521.1 + 150620 0.71 0.485297
Target:  5'- gCUGUUgCgGCGGCUGCUgcgcaggcgggggcgUGCGCGACg -3'
miRNA:   3'- gGACAGgGgCGCCGGCGG---------------ACGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 114920 0.71 0.488865
Target:  5'- aCgUGUCCCUcgaGCGGCUGCUggagagcugcucGCGCAGCg -3'
miRNA:   3'- -GgACAGGGG---CGCCGGCGGa-----------CGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 148694 0.71 0.499641
Target:  5'- cCCUGgagCCgCCggcGCGGCCGCCcGCACcauGGCu -3'
miRNA:   3'- -GGACa--GG-GG---CGCCGGCGGaCGUG---UUG- -5'
13956 5' -61.4 NC_003521.1 + 114242 0.71 0.508701
Target:  5'- gCCgGUgCCCGgcCGGCCGCCUGC-CGu- -3'
miRNA:   3'- -GGaCAgGGGC--GCCGGCGGACGuGUug -5'
13956 5' -61.4 NC_003521.1 + 45907 0.71 0.512345
Target:  5'- gCCgGaCCCCGCggagccggcggcgguGGCCGUCUGCGuCGGCg -3'
miRNA:   3'- -GGaCaGGGGCG---------------CCGGCGGACGU-GUUG- -5'
13956 5' -61.4 NC_003521.1 + 123026 0.71 0.515085
Target:  5'- aUCUcGUCCaagcacacgcucaaCCGCGGCUGCCUGU-CGGCg -3'
miRNA:   3'- -GGA-CAGG--------------GGCGCCGGCGGACGuGUUG- -5'
13956 5' -61.4 NC_003521.1 + 111480 0.71 0.516914
Target:  5'- gCCUuUCCCuccuuCGCGGCgcucaacCGCCUGCugGGCg -3'
miRNA:   3'- -GGAcAGGG-----GCGCCG-------GCGGACGugUUG- -5'
13956 5' -61.4 NC_003521.1 + 135251 0.71 0.51783
Target:  5'- gCCUGcCCCUGCuaCCGgCUGCACAAg -3'
miRNA:   3'- -GGACaGGGGCGccGGCgGACGUGUUg -5'
13956 5' -61.4 NC_003521.1 + 16847 0.71 0.527023
Target:  5'- uCCUccGUCCuCCcCGGUCGCCUcgcagGCGCAGCu -3'
miRNA:   3'- -GGA--CAGG-GGcGCCGGCGGA-----CGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 24702 0.71 0.527023
Target:  5'- aCCUGUUccgagCCCGcCGGCC-CCUGCGCc-- -3'
miRNA:   3'- -GGACAG-----GGGC-GCCGGcGGACGUGuug -5'
13956 5' -61.4 NC_003521.1 + 57262 0.71 0.527023
Target:  5'- --cGUCCgugaCCGCGGCCaucgaggagaGCCUGCACucGCg -3'
miRNA:   3'- ggaCAGG----GGCGCCGG----------CGGACGUGu-UG- -5'
13956 5' -61.4 NC_003521.1 + 163966 0.7 0.536276
Target:  5'- uUCgg-CCUCGUGGCCGCCguugGCGCcGCu -3'
miRNA:   3'- -GGacaGGGGCGCCGGCGGa---CGUGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.