miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13956 5' -61.4 NC_003521.1 + 25829 1.11 0.001112
Target:  5'- aCCUGUCCCCGCGGCCGCCUGCACAACa -3'
miRNA:   3'- -GGACAGGGGCGCCGGCGGACGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 74410 0.81 0.125571
Target:  5'- aCCUGggCCCCGUGGCgCGCCacgucguccUGCACGGCg -3'
miRNA:   3'- -GGACa-GGGGCGCCG-GCGG---------ACGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 223844 0.8 0.156026
Target:  5'- gCUGUCCCUGCGGCUGC-UGCuGCGGCu -3'
miRNA:   3'- gGACAGGGGCGCCGGCGgACG-UGUUG- -5'
13956 5' -61.4 NC_003521.1 + 113352 0.79 0.184181
Target:  5'- uCCUGcaCCCgGCGGCCGUCUGCGCcuCg -3'
miRNA:   3'- -GGACa-GGGgCGCCGGCGGACGUGuuG- -5'
13956 5' -61.4 NC_003521.1 + 88806 0.78 0.188552
Target:  5'- cCCUG-CCCCGaggaGGCCguuucggugcGCCUGCACGGCu -3'
miRNA:   3'- -GGACaGGGGCg---CCGG----------CGGACGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 30248 0.77 0.248437
Target:  5'- --gGUCCgCGCGGuuGCCgugGCGCAGCu -3'
miRNA:   3'- ggaCAGGgGCGCCggCGGa--CGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 197257 0.76 0.265092
Target:  5'- cCCcGUCCCCccagucaGCGGCCGCCucUGuCGCGGCg -3'
miRNA:   3'- -GGaCAGGGG-------CGCCGGCGG--AC-GUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 61986 0.76 0.283883
Target:  5'- uCCUGUaccagUCCCGCGGCUuCCgucagGCACAGCg -3'
miRNA:   3'- -GGACA-----GGGGCGCCGGcGGa----CGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 60950 0.76 0.283883
Target:  5'- cCCggGUCCCCcgcGCGGCCGCa-GCACGAa -3'
miRNA:   3'- -GGa-CAGGGG---CGCCGGCGgaCGUGUUg -5'
13956 5' -61.4 NC_003521.1 + 149453 0.75 0.303057
Target:  5'- --aGUCCUCGUGGCCGCCgGUGgCGACg -3'
miRNA:   3'- ggaCAGGGGCGCCGGCGGaCGU-GUUG- -5'
13956 5' -61.4 NC_003521.1 + 125996 0.75 0.309666
Target:  5'- uUCUGUCCgugcaCCGUGGCCGCCgcguUGCGCuccGACa -3'
miRNA:   3'- -GGACAGG-----GGCGCCGGCGG----ACGUG---UUG- -5'
13956 5' -61.4 NC_003521.1 + 75821 0.74 0.328056
Target:  5'- aCCUGUCCuuGCGGCCGaUCUcGCccucgggaagauggGCGACa -3'
miRNA:   3'- -GGACAGGggCGCCGGC-GGA-CG--------------UGUUG- -5'
13956 5' -61.4 NC_003521.1 + 18353 0.74 0.330148
Target:  5'- uCCUccGUCCCCGCGGCCGUCgucuccagGUccgAUAACa -3'
miRNA:   3'- -GGA--CAGGGGCGCCGGCGGa-------CG---UGUUG- -5'
13956 5' -61.4 NC_003521.1 + 126052 0.74 0.337194
Target:  5'- cCCUGggCCUCGCaGGCCGgCUGCcugaGCGACg -3'
miRNA:   3'- -GGACa-GGGGCG-CCGGCgGACG----UGUUG- -5'
13956 5' -61.4 NC_003521.1 + 73600 0.74 0.337194
Target:  5'- aCCUGgcgCCCUacaccaagauGCGGCgCGCCUGC-CAGCc -3'
miRNA:   3'- -GGACa--GGGG----------CGCCG-GCGGACGuGUUG- -5'
13956 5' -61.4 NC_003521.1 + 225016 0.74 0.358983
Target:  5'- aCUGccggagCCCCGacgcgcuGGCCGCCUGCGuCGGCg -3'
miRNA:   3'- gGACa-----GGGGCg------CCGGCGGACGU-GUUG- -5'
13956 5' -61.4 NC_003521.1 + 105583 0.74 0.366462
Target:  5'- gCCgUGUCgUCGCcGCCGCCgGCGCAGCc -3'
miRNA:   3'- -GG-ACAGgGGCGcCGGCGGaCGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 30075 0.73 0.374048
Target:  5'- gCC-GUCCCCGcCGGCCGCUcacgGUAgCAGCg -3'
miRNA:   3'- -GGaCAGGGGC-GCCGGCGGa---CGU-GUUG- -5'
13956 5' -61.4 NC_003521.1 + 117320 0.73 0.374048
Target:  5'- gCCgg-CUCCGCGGCCGCCUcGgGCGAa -3'
miRNA:   3'- -GGacaGGGGCGCCGGCGGA-CgUGUUg -5'
13956 5' -61.4 NC_003521.1 + 217467 0.73 0.381738
Target:  5'- aUCUGcaCCgCCGUGGCCuGCCUGgGCGGCa -3'
miRNA:   3'- -GGACa-GG-GGCGCCGG-CGGACgUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.