miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13956 5' -61.4 NC_003521.1 + 160 0.68 0.669324
Target:  5'- aCCaGUCCCCGCGacgacCCGCCgGCcCGAa -3'
miRNA:   3'- -GGaCAGGGGCGCc----GGCGGaCGuGUUg -5'
13956 5' -61.4 NC_003521.1 + 477 0.68 0.65978
Target:  5'- aCCgGUUUCCGCGGCgGCgUGCgGCGGg -3'
miRNA:   3'- -GGaCAGGGGCGCCGgCGgACG-UGUUg -5'
13956 5' -61.4 NC_003521.1 + 16847 0.71 0.527023
Target:  5'- uCCUccGUCCuCCcCGGUCGCCUcgcagGCGCAGCu -3'
miRNA:   3'- -GGA--CAGG-GGcGCCGGCGGA-----CGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 16882 0.73 0.387185
Target:  5'- ---uUCCCCGCGGCCGCCUcgacccccucggccGCGCc-- -3'
miRNA:   3'- ggacAGGGGCGCCGGCGGA--------------CGUGuug -5'
13956 5' -61.4 NC_003521.1 + 18353 0.74 0.330148
Target:  5'- uCCUccGUCCCCGCGGCCGUCgucuccagGUccgAUAACa -3'
miRNA:   3'- -GGA--CAGGGGCGCCGGCGGa-------CG---UGUUG- -5'
13956 5' -61.4 NC_003521.1 + 18977 0.73 0.405435
Target:  5'- cCCUGgugguggacgCCCacaGCGGCCaGCUguUGCACAACg -3'
miRNA:   3'- -GGACa---------GGGg--CGCCGG-CGG--ACGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 19136 0.69 0.63106
Target:  5'- --cGUCCagGCGGUCGCC-GUACGGCa -3'
miRNA:   3'- ggaCAGGggCGCCGGCGGaCGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 22592 0.66 0.779679
Target:  5'- cCCgugacgGcCCCUGCGGUCGCCUGaccuccguugccCGgGACa -3'
miRNA:   3'- -GGa-----CaGGGGCGCCGGCGGAC------------GUgUUG- -5'
13956 5' -61.4 NC_003521.1 + 24702 0.71 0.527023
Target:  5'- aCCUGUUccgagCCCGcCGGCC-CCUGCGCc-- -3'
miRNA:   3'- -GGACAG-----GGGC-GCCGGcGGACGUGuug -5'
13956 5' -61.4 NC_003521.1 + 25829 1.11 0.001112
Target:  5'- aCCUGUCCCCGCGGCCGCCUGCACAACa -3'
miRNA:   3'- -GGACAGGGGCGCCGGCGGACGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 28242 0.7 0.583288
Target:  5'- gCUG-CCgCCGUGGCCGUgaGCGCcGCc -3'
miRNA:   3'- gGACaGG-GGCGCCGGCGgaCGUGuUG- -5'
13956 5' -61.4 NC_003521.1 + 28289 0.66 0.788301
Target:  5'- cCCgcUCCCCGCGGCgUGCUggaggaGgACAGCg -3'
miRNA:   3'- -GGacAGGGGCGCCG-GCGGa-----CgUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 28825 0.68 0.669324
Target:  5'- aCCUggcGUgUCUGCGG-CGCCUGgACGACg -3'
miRNA:   3'- -GGA---CAgGGGCGCCgGCGGACgUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 30075 0.73 0.374048
Target:  5'- gCC-GUCCCCGcCGGCCGCUcacgGUAgCAGCg -3'
miRNA:   3'- -GGaCAGGGGC-GCCGGCGGa---CGU-GUUG- -5'
13956 5' -61.4 NC_003521.1 + 30248 0.77 0.248437
Target:  5'- --gGUCCgCGCGGuuGCCgugGCGCAGCu -3'
miRNA:   3'- ggaCAGGgGCGCCggCGGa--CGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 34611 0.66 0.796799
Target:  5'- aCCUGggCCUCaCGGCCuccgcCCUGCGCcGCu -3'
miRNA:   3'- -GGACa-GGGGcGCCGGc----GGACGUGuUG- -5'
13956 5' -61.4 NC_003521.1 + 34744 0.66 0.805168
Target:  5'- cUCUGcUUCCGCGaGCUgcugGCCUGCgGCGACg -3'
miRNA:   3'- -GGACaGGGGCGC-CGG----CGGACG-UGUUG- -5'
13956 5' -61.4 NC_003521.1 + 34778 0.7 0.536276
Target:  5'- --cGUCucggCCCGCGGCCGCUaccUGCGCucGCu -3'
miRNA:   3'- ggaCAG----GGGCGCCGGCGG---ACGUGu-UG- -5'
13956 5' -61.4 NC_003521.1 + 34993 0.66 0.779679
Target:  5'- --gGUCUCCGgGGCCaGCgaGCGCuuGCg -3'
miRNA:   3'- ggaCAGGGGCgCCGG-CGgaCGUGu-UG- -5'
13956 5' -61.4 NC_003521.1 + 35289 0.67 0.725776
Target:  5'- gCgUGcCCaaCCGCGuCCGCCggGCACGACg -3'
miRNA:   3'- -GgACaGG--GGCGCcGGCGGa-CGUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.