miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13956 5' -61.4 NC_003521.1 + 241026 0.68 0.65978
Target:  5'- aCCgGUUUCCGCGGCgGCgUGCgGCGGg -3'
miRNA:   3'- -GGaCAGGGGCGCCGgCGgACG-UGUUg -5'
13956 5' -61.4 NC_003521.1 + 240709 0.68 0.669324
Target:  5'- aCCaGUCCCCGCGacgacCCGCCgGCcCGAa -3'
miRNA:   3'- -GGaCAGGGGCGCc----GGCGGaCGuGUUg -5'
13956 5' -61.4 NC_003521.1 + 240100 0.66 0.805168
Target:  5'- gUCUGcUCCCGUgGGCCGgCC-GUACGGCu -3'
miRNA:   3'- -GGACaGGGGCG-CCGGC-GGaCGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 239706 0.66 0.779679
Target:  5'- gCUGUCCCCGagcCCGCgCUGCuGCGGa -3'
miRNA:   3'- gGACAGGGGCgccGGCG-GACG-UGUUg -5'
13956 5' -61.4 NC_003521.1 + 238951 0.68 0.697767
Target:  5'- --cGUCCCa-CGGCCGCCgaccUGCuccaGCAGCa -3'
miRNA:   3'- ggaCAGGGgcGCCGGCGG----ACG----UGUUG- -5'
13956 5' -61.4 NC_003521.1 + 238737 0.69 0.597571
Target:  5'- cCCUGggccgcgucuccgCCCCGCccgccgaGGCCGCCcUGCGCc-- -3'
miRNA:   3'- -GGACa------------GGGGCG-------CCGGCGG-ACGUGuug -5'
13956 5' -61.4 NC_003521.1 + 234760 0.7 0.554947
Target:  5'- gCUGgcgugaucacgCCCUGCggGGCCGCUgggGCACGGCu -3'
miRNA:   3'- gGACa----------GGGGCG--CCGGCGGa--CGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 228967 0.66 0.779679
Target:  5'- aUCUGcgaCCUGCGGCUGCaCgacCACAACa -3'
miRNA:   3'- -GGACag-GGGCGCCGGCG-Gac-GUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 227121 0.69 0.621479
Target:  5'- gCUGgagCCCUGaugGGCCuGCCcgGCGCGGCg -3'
miRNA:   3'- gGACa--GGGGCg--CCGG-CGGa-CGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 226380 0.67 0.725776
Target:  5'- gCUGacgCCgCCGCagGGCCGUgUGCACcACg -3'
miRNA:   3'- gGACa--GG-GGCG--CCGGCGgACGUGuUG- -5'
13956 5' -61.4 NC_003521.1 + 225584 0.7 0.583288
Target:  5'- uCCUGgcgcucggcggCCUCGCgcucGGCCGCCUGCAg--- -3'
miRNA:   3'- -GGACa----------GGGGCG----CCGGCGGACGUguug -5'
13956 5' -61.4 NC_003521.1 + 225016 0.74 0.358983
Target:  5'- aCUGccggagCCCCGacgcgcuGGCCGCCUGCGuCGGCg -3'
miRNA:   3'- gGACa-----GGGGCg------CCGGCGGACGU-GUUG- -5'
13956 5' -61.4 NC_003521.1 + 223844 0.8 0.156026
Target:  5'- gCUGUCCCUGCGGCUGC-UGCuGCGGCu -3'
miRNA:   3'- gGACAGGGGCGCCGGCGgACG-UGUUG- -5'
13956 5' -61.4 NC_003521.1 + 223107 0.67 0.744107
Target:  5'- aUCUGcgggaUgGCGGCCGUCUcGCGCAGCa -3'
miRNA:   3'- -GGACagg--GgCGCCGGCGGA-CGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 222493 0.66 0.779679
Target:  5'- aCUgGUUCCUGCGGCCcaGCCgcgGuCAgGACa -3'
miRNA:   3'- gGA-CAGGGGCGCCGG--CGGa--C-GUgUUG- -5'
13956 5' -61.4 NC_003521.1 + 222218 0.66 0.788301
Target:  5'- cCUUGUCCugaCCGCGGCUggGCC-GCAgGAa -3'
miRNA:   3'- -GGACAGG---GGCGCCGG--CGGaCGUgUUg -5'
13956 5' -61.4 NC_003521.1 + 221944 0.66 0.805168
Target:  5'- gCCUcGUCCUCGUcGCUGCucagCUGaCACGACa -3'
miRNA:   3'- -GGA-CAGGGGCGcCGGCG----GAC-GUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 219347 0.73 0.413537
Target:  5'- gCUUGUCCuuGUaGGCCGCCagcUGCACGc- -3'
miRNA:   3'- -GGACAGGggCG-CCGGCGG---ACGUGUug -5'
13956 5' -61.4 NC_003521.1 + 219319 0.66 0.77445
Target:  5'- aCCUGggCgCCGUGGCgUGCCUGUccguggcggugauccACGACc -3'
miRNA:   3'- -GGACa-GgGGCGCCG-GCGGACG---------------UGUUG- -5'
13956 5' -61.4 NC_003521.1 + 218704 0.67 0.704349
Target:  5'- gCCaUGUCCuCCGUGgugccGCCGCugucgcuggccaugCUGCGCGGCg -3'
miRNA:   3'- -GG-ACAGG-GGCGC-----CGGCG--------------GACGUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.