miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13956 5' -61.4 NC_003521.1 + 42944 0.66 0.779679
Target:  5'- -----aUCCGCuGCCGCCUGCAgccCAGCg -3'
miRNA:   3'- ggacagGGGCGcCGGCGGACGU---GUUG- -5'
13956 5' -61.4 NC_003521.1 + 213612 0.66 0.762096
Target:  5'- gCUGUUggggUgGCGGUCGCC-GCGCAGCa -3'
miRNA:   3'- gGACAGg---GgCGCCGGCGGaCGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 166460 0.66 0.779679
Target:  5'- gCC-GUCgCCGCacuGGCCGUagccGCGCAGCa -3'
miRNA:   3'- -GGaCAGgGGCG---CCGGCGga--CGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 54036 0.66 0.788301
Target:  5'- uCUUGcCCCCGCcGCCGCCacCACcGCc -3'
miRNA:   3'- -GGACaGGGGCGcCGGCGGacGUGuUG- -5'
13956 5' -61.4 NC_003521.1 + 50282 0.66 0.779679
Target:  5'- gCCggGUCCgCCGCuGCUGCCgccGCACcuCg -3'
miRNA:   3'- -GGa-CAGG-GGCGcCGGCGGa--CGUGuuG- -5'
13956 5' -61.4 NC_003521.1 + 101023 0.66 0.762096
Target:  5'- --cGUCCUgGCgGGCaCGCCcGUGCAGCu -3'
miRNA:   3'- ggaCAGGGgCG-CCG-GCGGaCGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 142352 0.66 0.779679
Target:  5'- gCCacggCCgCCGCGGCCGCCgccGCcuccucCAACg -3'
miRNA:   3'- -GGaca-GG-GGCGCCGGCGGa--CGu-----GUUG- -5'
13956 5' -61.4 NC_003521.1 + 222218 0.66 0.788301
Target:  5'- cCUUGUCCugaCCGCGGCUggGCC-GCAgGAa -3'
miRNA:   3'- -GGACAGG---GGCGCCGG--CGGaCGUgUUg -5'
13956 5' -61.4 NC_003521.1 + 206880 0.66 0.788301
Target:  5'- gCUGcUCgCCGC-GCaCGCC-GCACAGCa -3'
miRNA:   3'- gGAC-AGgGGCGcCG-GCGGaCGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 34993 0.66 0.779679
Target:  5'- --gGUCUCCGgGGCCaGCgaGCGCuuGCg -3'
miRNA:   3'- ggaCAGGGGCgCCGG-CGgaCGUGu-UG- -5'
13956 5' -61.4 NC_003521.1 + 164461 0.66 0.770941
Target:  5'- gCCgucacgGUCgCCGCuGCCGCC-GcCGCAGCc -3'
miRNA:   3'- -GGa-----CAGgGGCGcCGGCGGaC-GUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 34744 0.66 0.805168
Target:  5'- cUCUGcUUCCGCGaGCUgcugGCCUGCgGCGACg -3'
miRNA:   3'- -GGACaGGGGCGC-CGG----CGGACG-UGUUG- -5'
13956 5' -61.4 NC_003521.1 + 144427 0.66 0.770941
Target:  5'- gCCUGUuggCCaCCGCGGaCgGUCUGUauuuauACAACg -3'
miRNA:   3'- -GGACA---GG-GGCGCC-GgCGGACG------UGUUG- -5'
13956 5' -61.4 NC_003521.1 + 201609 0.66 0.779679
Target:  5'- gCUGUCCCCGagcCCGCgCUGCuGCGGa -3'
miRNA:   3'- gGACAGGGGCgccGGCG-GACG-UGUUg -5'
13956 5' -61.4 NC_003521.1 + 112870 0.66 0.779679
Target:  5'- gCUGcUCCCGCGGCUGgCCg--ACGACg -3'
miRNA:   3'- gGACaGGGGCGCCGGC-GGacgUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 100123 0.66 0.779679
Target:  5'- --cGaCCCCGCGGCUGgcgguCCUGCGgGAa -3'
miRNA:   3'- ggaCaGGGGCGCCGGC-----GGACGUgUUg -5'
13956 5' -61.4 NC_003521.1 + 201215 0.66 0.762096
Target:  5'- gUCUGcUCCCGCugGGCCGgCC-GUACGGCu -3'
miRNA:   3'- -GGACaGGGGCG--CCGGC-GGaCGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 42787 0.66 0.788301
Target:  5'- aCCUGcccgugcagCCCgGCGGCUGCacgcGcCGCAACg -3'
miRNA:   3'- -GGACa--------GGGgCGCCGGCGga--C-GUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 84545 0.66 0.770941
Target:  5'- --aG-CCCUGCaGCCGCUUGUuCAGCg -3'
miRNA:   3'- ggaCaGGGGCGcCGGCGGACGuGUUG- -5'
13956 5' -61.4 NC_003521.1 + 22592 0.66 0.779679
Target:  5'- cCCgugacgGcCCCUGCGGUCGCCUGaccuccguugccCGgGACa -3'
miRNA:   3'- -GGa-----CaGGGGCGCCGGCGGAC------------GUgUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.