miRNA display CGI


Results 1 - 20 of 191 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13956 5' -61.4 NC_003521.1 + 59070 0.7 0.561527
Target:  5'- gUUGUCCUcgucggccggaucgCGCGGCCGCUUGgC-CAGCg -3'
miRNA:   3'- gGACAGGG--------------GCGCCGGCGGAC-GuGUUG- -5'
13956 5' -61.4 NC_003521.1 + 219347 0.73 0.413537
Target:  5'- gCUUGUCCuuGUaGGCCGCCagcUGCACGc- -3'
miRNA:   3'- -GGACAGGggCG-CCGGCGG---ACGUGUug -5'
13956 5' -61.4 NC_003521.1 + 100266 0.72 0.43843
Target:  5'- gCUGUCgCCGCcGCCGCC-GCAgCAGCc -3'
miRNA:   3'- gGACAGgGGCGcCGGCGGaCGU-GUUG- -5'
13956 5' -61.4 NC_003521.1 + 150620 0.71 0.485297
Target:  5'- gCUGUUgCgGCGGCUGCUgcgcaggcgggggcgUGCGCGACg -3'
miRNA:   3'- gGACAGgGgCGCCGGCGG---------------ACGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 114920 0.71 0.488865
Target:  5'- aCgUGUCCCUcgaGCGGCUGCUggagagcugcucGCGCAGCg -3'
miRNA:   3'- -GgACAGGGG---CGCCGGCGGa-----------CGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 111480 0.71 0.516914
Target:  5'- gCCUuUCCCuccuuCGCGGCgcucaacCGCCUGCugGGCg -3'
miRNA:   3'- -GGAcAGGG-----GCGCCG-------GCGGACGugUUG- -5'
13956 5' -61.4 NC_003521.1 + 112778 0.7 0.554947
Target:  5'- gCCaUGUgCCUGCuGGCCGCCUacggGCACGc- -3'
miRNA:   3'- -GG-ACAgGGGCG-CCGGCGGA----CGUGUug -5'
13956 5' -61.4 NC_003521.1 + 234760 0.7 0.554947
Target:  5'- gCUGgcgugaucacgCCCUGCggGGCCGCUgggGCACGGCu -3'
miRNA:   3'- gGACa----------GGGGCG--CCGGCGGa--CGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 40481 0.7 0.554947
Target:  5'- -aUGUgUCCGCGGCgCGCCacgGCGCcGCa -3'
miRNA:   3'- ggACAgGGGCGCCG-GCGGa--CGUGuUG- -5'
13956 5' -61.4 NC_003521.1 + 18977 0.73 0.405435
Target:  5'- cCCUGgugguggacgCCCacaGCGGCCaGCUguUGCACAACg -3'
miRNA:   3'- -GGACa---------GGGg--CGCCGG-CGG--ACGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 114502 0.73 0.405435
Target:  5'- gCUGUCCgUCGUGGCCGCCgUGCcCAc- -3'
miRNA:   3'- gGACAGG-GGCGCCGGCGG-ACGuGUug -5'
13956 5' -61.4 NC_003521.1 + 190983 0.73 0.389534
Target:  5'- aCCgccaCCUgGaCGGCCGUCUGCACGGCg -3'
miRNA:   3'- -GGaca-GGGgC-GCCGGCGGACGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 30248 0.77 0.248437
Target:  5'- --gGUCCgCGCGGuuGCCgugGCGCAGCu -3'
miRNA:   3'- ggaCAGGgGCGCCggCGGa--CGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 197257 0.76 0.265092
Target:  5'- cCCcGUCCCCccagucaGCGGCCGCCucUGuCGCGGCg -3'
miRNA:   3'- -GGaCAGGGG-------CGCCGGCGG--AC-GUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 125996 0.75 0.309666
Target:  5'- uUCUGUCCgugcaCCGUGGCCGCCgcguUGCGCuccGACa -3'
miRNA:   3'- -GGACAGG-----GGCGCCGGCGG----ACGUG---UUG- -5'
13956 5' -61.4 NC_003521.1 + 75821 0.74 0.328056
Target:  5'- aCCUGUCCuuGCGGCCGaUCUcGCccucgggaagauggGCGACa -3'
miRNA:   3'- -GGACAGGggCGCCGGC-GGA-CG--------------UGUUG- -5'
13956 5' -61.4 NC_003521.1 + 73600 0.74 0.337194
Target:  5'- aCCUGgcgCCCUacaccaagauGCGGCgCGCCUGC-CAGCc -3'
miRNA:   3'- -GGACa--GGGG----------CGCCG-GCGGACGuGUUG- -5'
13956 5' -61.4 NC_003521.1 + 105583 0.74 0.366462
Target:  5'- gCCgUGUCgUCGCcGCCGCCgGCGCAGCc -3'
miRNA:   3'- -GG-ACAGgGGCGcCGGCGGaCGUGUUG- -5'
13956 5' -61.4 NC_003521.1 + 30075 0.73 0.374048
Target:  5'- gCC-GUCCCCGcCGGCCGCUcacgGUAgCAGCg -3'
miRNA:   3'- -GGaCAGGGGC-GCCGGCGGa---CGU-GUUG- -5'
13956 5' -61.4 NC_003521.1 + 16882 0.73 0.387185
Target:  5'- ---uUCCCCGCGGCCGCCUcgacccccucggccGCGCc-- -3'
miRNA:   3'- ggacAGGGGCGCCGGCGGA--------------CGUGuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.