miRNA display CGI


Results 41 - 60 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13957 3' -56.2 NC_003521.1 + 109076 0.67 0.929647
Target:  5'- gUCCUcGCCGUCgUGCAGGUACAUg--- -3'
miRNA:   3'- -GGGAcCGGCGG-ACGUUCGUGUAgaac -5'
13957 3' -56.2 NC_003521.1 + 28551 0.67 0.929647
Target:  5'- gCCCUGGCCaGCCUGguGGacccCGUgUUc -3'
miRNA:   3'- -GGGACCGG-CGGACguUCgu--GUAgAAc -5'
13957 3' -56.2 NC_003521.1 + 40743 0.67 0.929647
Target:  5'- gCCgUGGCgCGCC-GCGGaCACAUCUa- -3'
miRNA:   3'- -GGgACCG-GCGGaCGUUcGUGUAGAac -5'
13957 3' -56.2 NC_003521.1 + 123122 0.67 0.928627
Target:  5'- gCCgGGCCGCUguacgaaguacgGCAgcGGCGCGUCg-- -3'
miRNA:   3'- gGGaCCGGCGGa-----------CGU--UCGUGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 212810 0.67 0.928113
Target:  5'- cCCCUGGCCGUCguggGCcuguguuucgacaaGAGCcuCAUCa-- -3'
miRNA:   3'- -GGGACCGGCGGa---CG--------------UUCGu-GUAGaac -5'
13957 3' -56.2 NC_003521.1 + 168789 0.67 0.919032
Target:  5'- gCgCUGGCCGCCaGCcuGCugGCGUCg-- -3'
miRNA:   3'- -GgGACCGGCGGaCGuuCG--UGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 56250 0.67 0.919032
Target:  5'- gCCgUGGaCCGgCUGCGGccccuGCACAUCggcgUGg -3'
miRNA:   3'- -GGgACC-GGCgGACGUU-----CGUGUAGa---AC- -5'
13957 3' -56.2 NC_003521.1 + 73933 0.67 0.919032
Target:  5'- gCCUUGGgCGCCU-CGGGC--GUCUUGg -3'
miRNA:   3'- -GGGACCgGCGGAcGUUCGugUAGAAC- -5'
13957 3' -56.2 NC_003521.1 + 209194 0.67 0.919032
Target:  5'- cUCUUGGCCGUCuugaUGUugGGGUACGUCUUc -3'
miRNA:   3'- -GGGACCGGCGG----ACG--UUCGUGUAGAAc -5'
13957 3' -56.2 NC_003521.1 + 103602 0.67 0.918477
Target:  5'- aCCUGGCCuaCcGCAcggcgcuGGCGCGUCa-- -3'
miRNA:   3'- gGGACCGGcgGaCGU-------UCGUGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 150211 0.67 0.91736
Target:  5'- uUCUGGCagguccacaGCCUGCugggcuacaucuccGAGCACGUCa-- -3'
miRNA:   3'- gGGACCGg--------CGGACG--------------UUCGUGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 52810 0.67 0.915669
Target:  5'- aCCUGGaCCGCCuucacggugaaaaucUGCA-GCACGUUg-- -3'
miRNA:   3'- gGGACC-GGCGG---------------ACGUuCGUGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 57254 0.67 0.913382
Target:  5'- aCCgcGGCCaucgaggagaGCCUGCAcucGCGCAUCUa- -3'
miRNA:   3'- gGGa-CCGG----------CGGACGUu--CGUGUAGAac -5'
13957 3' -56.2 NC_003521.1 + 127762 0.67 0.907505
Target:  5'- aCCUGGUgGCCauccUGCGAcuggugacGCGCAUCUc- -3'
miRNA:   3'- gGGACCGgCGG----ACGUU--------CGUGUAGAac -5'
13957 3' -56.2 NC_003521.1 + 85336 0.67 0.907505
Target:  5'- gCCCgcGGcCCGCC-GCAGGCcgGCGUCUc- -3'
miRNA:   3'- -GGGa-CC-GGCGGaCGUUCG--UGUAGAac -5'
13957 3' -56.2 NC_003521.1 + 112696 0.67 0.901403
Target:  5'- gCCUGGgCCGCCUGagcGgGCGUCg-- -3'
miRNA:   3'- gGGACC-GGCGGACguuCgUGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 103097 0.67 0.901403
Target:  5'- gCCCUGGCgCGCUUcucGC-AGCGCcgCUa- -3'
miRNA:   3'- -GGGACCG-GCGGA---CGuUCGUGuaGAac -5'
13957 3' -56.2 NC_003521.1 + 13319 0.67 0.901403
Target:  5'- gCCUGGgCUGCCUGCcguGGCAacuaAUCcUGu -3'
miRNA:   3'- gGGACC-GGCGGACGu--UCGUg---UAGaAC- -5'
13957 3' -56.2 NC_003521.1 + 216810 0.68 0.895079
Target:  5'- uCCCUGGCCGC-UGCAcuguGCugGcUCg-- -3'
miRNA:   3'- -GGGACCGGCGgACGUu---CGugU-AGaac -5'
13957 3' -56.2 NC_003521.1 + 53582 0.68 0.888536
Target:  5'- uCCCggGGCCGCCUcgAAGCuCA-CUUGg -3'
miRNA:   3'- -GGGa-CCGGCGGAcgUUCGuGUaGAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.