Results 21 - 40 of 106 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13957 | 3' | -56.2 | NC_003521.1 | + | 52184 | 0.66 | 0.94386 |
Target: 5'- aCgUGuGCCGCCggggcgGCGAGCuCAUCa-- -3' miRNA: 3'- gGgAC-CGGCGGa-----CGUUCGuGUAGaac -5' |
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13957 | 3' | -56.2 | NC_003521.1 | + | 101170 | 0.66 | 0.94386 |
Target: 5'- uCCCUcuccucagacGGCguccgCGCCcgGCGGGCGgAUCUUGa -3' miRNA: 3'- -GGGA----------CCG-----GCGGa-CGUUCGUgUAGAAC- -5' |
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13957 | 3' | -56.2 | NC_003521.1 | + | 128686 | 0.66 | 0.94386 |
Target: 5'- aUCCUGGagaaCCUGCG-GCGCGUCUa- -3' miRNA: 3'- -GGGACCggc-GGACGUuCGUGUAGAac -5' |
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13957 | 3' | -56.2 | NC_003521.1 | + | 83964 | 0.66 | 0.94386 |
Target: 5'- cCCUUGGaCGCCcGCucGCGCGUCc-- -3' miRNA: 3'- -GGGACCgGCGGaCGuuCGUGUAGaac -5' |
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13957 | 3' | -56.2 | NC_003521.1 | + | 123004 | 0.66 | 0.94386 |
Target: 5'- aCCgcGGCUGCCUGUcGGCGC-UCa-- -3' miRNA: 3'- gGGa-CCGGCGGACGuUCGUGuAGaac -5' |
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13957 | 3' | -56.2 | NC_003521.1 | + | 110154 | 0.66 | 0.94342 |
Target: 5'- aCCCguggaaGGCCGCCaugaugGCGcucauauccagauAGUugAUCUUGa -3' miRNA: 3'- -GGGa-----CCGGCGGa-----CGU-------------UCGugUAGAAC- -5' |
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13957 | 3' | -56.2 | NC_003521.1 | + | 3922 | 0.66 | 0.941181 |
Target: 5'- uCCC-GGCCGCCgagGCAgacggcggcggccguGGCACG-CUa- -3' miRNA: 3'- -GGGaCCGGCGGa--CGU---------------UCGUGUaGAac -5' |
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13957 | 3' | -56.2 | NC_003521.1 | + | 106073 | 0.66 | 0.93935 |
Target: 5'- aUCUGGCUGCCggGCAccguGGCcuGCGUCa-- -3' miRNA: 3'- gGGACCGGCGGa-CGU----UCG--UGUAGaac -5' |
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13957 | 3' | -56.2 | NC_003521.1 | + | 85661 | 0.66 | 0.93935 |
Target: 5'- gCCU-GCUGCCgGcCAAGCGCAgccgCUUGu -3' miRNA: 3'- gGGAcCGGCGGaC-GUUCGUGUa---GAAC- -5' |
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13957 | 3' | -56.2 | NC_003521.1 | + | 160267 | 0.66 | 0.93935 |
Target: 5'- uCCCgGGuuGCCUGguGGUAgcCGUCg-- -3' miRNA: 3'- -GGGaCCggCGGACguUCGU--GUAGaac -5' |
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13957 | 3' | -56.2 | NC_003521.1 | + | 76273 | 0.66 | 0.93935 |
Target: 5'- ---cGGCCGCCUGCGAG-ACcUCg-- -3' miRNA: 3'- gggaCCGGCGGACGUUCgUGuAGaac -5' |
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13957 | 3' | -56.2 | NC_003521.1 | + | 65730 | 0.66 | 0.93935 |
Target: 5'- gCCCUGGCCGgCaaaAAGgGCAUCg-- -3' miRNA: 3'- -GGGACCGGCgGacgUUCgUGUAGaac -5' |
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13957 | 3' | -56.2 | NC_003521.1 | + | 113613 | 0.66 | 0.93935 |
Target: 5'- cCCCcGGCCcgucccCCUGgAAGCcccccgGCGUCUUGg -3' miRNA: 3'- -GGGaCCGGc-----GGACgUUCG------UGUAGAAC- -5' |
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13957 | 3' | -56.2 | NC_003521.1 | + | 192623 | 0.66 | 0.934612 |
Target: 5'- cCCCaacGCCGCCcgUGCGAGCACcgagcacccAUCUg- -3' miRNA: 3'- -GGGac-CGGCGG--ACGUUCGUG---------UAGAac -5' |
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13957 | 3' | -56.2 | NC_003521.1 | + | 66094 | 0.66 | 0.934612 |
Target: 5'- uUCUUGGCCgucucgGCCUGCuuguccAGCAUGgUCUUGa -3' miRNA: 3'- -GGGACCGG------CGGACGu-----UCGUGU-AGAAC- -5' |
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13957 | 3' | -56.2 | NC_003521.1 | + | 109635 | 0.66 | 0.934612 |
Target: 5'- aCCUGGCCuGCCUGCc-GCugGa---- -3' miRNA: 3'- gGGACCGG-CGGACGuuCGugUagaac -5' |
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13957 | 3' | -56.2 | NC_003521.1 | + | 113691 | 0.66 | 0.934612 |
Target: 5'- aUCUGcGCCGCCUGgAGGUGCAcgacgcgcugcUCUUc -3' miRNA: 3'- gGGAC-CGGCGGACgUUCGUGU-----------AGAAc -5' |
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13957 | 3' | -56.2 | NC_003521.1 | + | 77243 | 0.67 | 0.929647 |
Target: 5'- gCCCaucGCCGCCaGCAucacGCGCAUCg-- -3' miRNA: 3'- -GGGac-CGGCGGaCGUu---CGUGUAGaac -5' |
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13957 | 3' | -56.2 | NC_003521.1 | + | 28551 | 0.67 | 0.929647 |
Target: 5'- gCCCUGGCCaGCCUGguGGacccCGUgUUc -3' miRNA: 3'- -GGGACCGG-CGGACguUCgu--GUAgAAc -5' |
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13957 | 3' | -56.2 | NC_003521.1 | + | 109076 | 0.67 | 0.929647 |
Target: 5'- gUCCUcGCCGUCgUGCAGGUACAUg--- -3' miRNA: 3'- -GGGAcCGGCGG-ACGUUCGUGUAgaac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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