miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13957 3' -56.2 NC_003521.1 + 57254 0.67 0.913382
Target:  5'- aCCgcGGCCaucgaggagaGCCUGCAcucGCGCAUCUa- -3'
miRNA:   3'- gGGa-CCGG----------CGGACGUu--CGUGUAGAac -5'
13957 3' -56.2 NC_003521.1 + 60590 0.68 0.874804
Target:  5'- -gUUGGCCGgCUGCAucAGCGcCGUCUg- -3'
miRNA:   3'- ggGACCGGCgGACGU--UCGU-GUAGAac -5'
13957 3' -56.2 NC_003521.1 + 64366 0.75 0.493991
Target:  5'- gCCCUGGacaUGCCcgaggUGCGGGCGCGUCUg- -3'
miRNA:   3'- -GGGACCg--GCGG-----ACGUUCGUGUAGAac -5'
13957 3' -56.2 NC_003521.1 + 65730 0.66 0.93935
Target:  5'- gCCCUGGCCGgCaaaAAGgGCAUCg-- -3'
miRNA:   3'- -GGGACCGGCgGacgUUCgUGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 66094 0.66 0.934612
Target:  5'- uUCUUGGCCgucucgGCCUGCuuguccAGCAUGgUCUUGa -3'
miRNA:   3'- -GGGACCGG------CGGACGu-----UCGUGU-AGAAC- -5'
13957 3' -56.2 NC_003521.1 + 66567 0.71 0.758243
Target:  5'- aCCUGGCgCGCCagcGCAAcGUGCGUCUg- -3'
miRNA:   3'- gGGACCG-GCGGa--CGUU-CGUGUAGAac -5'
13957 3' -56.2 NC_003521.1 + 66659 0.66 0.956053
Target:  5'- uUCgUGcGCgGCCUGCAGGCccuggaGCGUCa-- -3'
miRNA:   3'- -GGgAC-CGgCGGACGUUCG------UGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 66823 0.72 0.710406
Target:  5'- gCgCUGGCgCGCCagGUcggugAAGCGCGUCUUGa -3'
miRNA:   3'- -GgGACCG-GCGGa-CG-----UUCGUGUAGAAC- -5'
13957 3' -56.2 NC_003521.1 + 70076 0.7 0.803418
Target:  5'- gCCUGuGUCGCCucaagUGCGAGCGuCAUCUc- -3'
miRNA:   3'- gGGAC-CGGCGG-----ACGUUCGU-GUAGAac -5'
13957 3' -56.2 NC_003521.1 + 73564 0.71 0.720135
Target:  5'- aCCUGGCCGUggUGCGGGCGCugGUCaUGa -3'
miRNA:   3'- gGGACCGGCGg-ACGUUCGUG--UAGaAC- -5'
13957 3' -56.2 NC_003521.1 + 73933 0.67 0.919032
Target:  5'- gCCUUGGgCGCCU-CGGGC--GUCUUGg -3'
miRNA:   3'- -GGGACCgGCGGAcGUUCGugUAGAAC- -5'
13957 3' -56.2 NC_003521.1 + 75257 0.7 0.794647
Target:  5'- gCCgaggagGGCCGgCUGCAcauGCACGUCa-- -3'
miRNA:   3'- gGGa-----CCGGCgGACGUu--CGUGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 76273 0.66 0.93935
Target:  5'- ---cGGCCGCCUGCGAG-ACcUCg-- -3'
miRNA:   3'- gggaCCGGCGGACGUUCgUGuAGaac -5'
13957 3' -56.2 NC_003521.1 + 76608 0.66 0.956053
Target:  5'- aCCUGGugcgcaagaCgGCCUGCGAGUuCGUCa-- -3'
miRNA:   3'- gGGACC---------GgCGGACGUUCGuGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 77243 0.67 0.929647
Target:  5'- gCCCaucGCCGCCaGCAucacGCGCAUCg-- -3'
miRNA:   3'- -GGGac-CGGCGGaCGUu---CGUGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 83964 0.66 0.94386
Target:  5'- cCCUUGGaCGCCcGCucGCGCGUCc-- -3'
miRNA:   3'- -GGGACCgGCGGaCGuuCGUGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 85336 0.67 0.907505
Target:  5'- gCCCgcGGcCCGCC-GCAGGCcgGCGUCUc- -3'
miRNA:   3'- -GGGa-CC-GGCGGaCGUUCG--UGUAGAac -5'
13957 3' -56.2 NC_003521.1 + 85661 0.66 0.93935
Target:  5'- gCCU-GCUGCCgGcCAAGCGCAgccgCUUGu -3'
miRNA:   3'- gGGAcCGGCGGaC-GUUCGUGUa---GAAC- -5'
13957 3' -56.2 NC_003521.1 + 87925 0.66 0.948146
Target:  5'- -gCUGGCCGCCgcgcCGGGCAUGcUCUUc -3'
miRNA:   3'- ggGACCGGCGGac--GUUCGUGU-AGAAc -5'
13957 3' -56.2 NC_003521.1 + 88032 0.74 0.601003
Target:  5'- aCCUGGCCcugGCCUGCGccaccuguccgcAGCugGUCUc- -3'
miRNA:   3'- gGGACCGG---CGGACGU------------UCGugUAGAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.