miRNA display CGI


Results 21 - 40 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13957 3' -56.2 NC_003521.1 + 45882 0.66 0.952209
Target:  5'- --gUGGCCGUCUGCGucGGCGCugauGUCg-- -3'
miRNA:   3'- gggACCGGCGGACGU--UCGUG----UAGaac -5'
13957 3' -56.2 NC_003521.1 + 192623 0.66 0.934612
Target:  5'- cCCCaacGCCGCCcgUGCGAGCACcgagcacccAUCUg- -3'
miRNA:   3'- -GGGac-CGGCGG--ACGUUCGUG---------UAGAac -5'
13957 3' -56.2 NC_003521.1 + 109635 0.66 0.934612
Target:  5'- aCCUGGCCuGCCUGCc-GCugGa---- -3'
miRNA:   3'- gGGACCGG-CGGACGuuCGugUagaac -5'
13957 3' -56.2 NC_003521.1 + 149451 0.66 0.948146
Target:  5'- uCCUcgUGGCCGCCggugGCGAcGCGCGc---- -3'
miRNA:   3'- -GGG--ACCGGCGGa---CGUU-CGUGUagaac -5'
13957 3' -56.2 NC_003521.1 + 128686 0.66 0.94386
Target:  5'- aUCCUGGagaaCCUGCG-GCGCGUCUa- -3'
miRNA:   3'- -GGGACCggc-GGACGUuCGUGUAGAac -5'
13957 3' -56.2 NC_003521.1 + 106073 0.66 0.93935
Target:  5'- aUCUGGCUGCCggGCAccguGGCcuGCGUCa-- -3'
miRNA:   3'- gGGACCGGCGGa-CGU----UCG--UGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 123004 0.66 0.94386
Target:  5'- aCCgcGGCUGCCUGUcGGCGC-UCa-- -3'
miRNA:   3'- gGGa-CCGGCGGACGuUCGUGuAGaac -5'
13957 3' -56.2 NC_003521.1 + 43750 0.66 0.948146
Target:  5'- -gUUGGCCGCCgcgGCcAGCACGg---- -3'
miRNA:   3'- ggGACCGGCGGa--CGuUCGUGUagaac -5'
13957 3' -56.2 NC_003521.1 + 66094 0.66 0.934612
Target:  5'- uUCUUGGCCgucucgGCCUGCuuguccAGCAUGgUCUUGa -3'
miRNA:   3'- -GGGACCGG------CGGACGu-----UCGUGU-AGAAC- -5'
13957 3' -56.2 NC_003521.1 + 113613 0.66 0.93935
Target:  5'- cCCCcGGCCcgucccCCUGgAAGCcccccgGCGUCUUGg -3'
miRNA:   3'- -GGGaCCGGc-----GGACgUUCG------UGUAGAAC- -5'
13957 3' -56.2 NC_003521.1 + 85661 0.66 0.93935
Target:  5'- gCCU-GCUGCCgGcCAAGCGCAgccgCUUGu -3'
miRNA:   3'- gGGAcCGGCGGaC-GUUCGUGUa---GAAC- -5'
13957 3' -56.2 NC_003521.1 + 189397 0.66 0.951813
Target:  5'- aCCCcGGuacuccacuuacuCCGCCUGCAGGUAUcUCa-- -3'
miRNA:   3'- -GGGaCC-------------GGCGGACGUUCGUGuAGaac -5'
13957 3' -56.2 NC_003521.1 + 168092 0.66 0.94386
Target:  5'- gCCUGGCCGCucCUGCucuGGCugAc---- -3'
miRNA:   3'- gGGACCGGCG--GACGu--UCGugUagaac -5'
13957 3' -56.2 NC_003521.1 + 155823 0.66 0.948146
Target:  5'- cUCCUGcGCCGgUcGCAGGCGCucCUUGa -3'
miRNA:   3'- -GGGAC-CGGCgGaCGUUCGUGuaGAAC- -5'
13957 3' -56.2 NC_003521.1 + 83964 0.66 0.94386
Target:  5'- cCCUUGGaCGCCcGCucGCGCGUCc-- -3'
miRNA:   3'- -GGGACCgGCGGaCGuuCGUGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 3922 0.66 0.941181
Target:  5'- uCCC-GGCCGCCgagGCAgacggcggcggccguGGCACG-CUa- -3'
miRNA:   3'- -GGGaCCGGCGGa--CGU---------------UCGUGUaGAac -5'
13957 3' -56.2 NC_003521.1 + 47683 0.66 0.956053
Target:  5'- gCCCUGGCC-CgaGCGAuGCuACAUCc-- -3'
miRNA:   3'- -GGGACCGGcGgaCGUU-CG-UGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 57254 0.67 0.913382
Target:  5'- aCCgcGGCCaucgaggagaGCCUGCAcucGCGCAUCUa- -3'
miRNA:   3'- gGGa-CCGG----------CGGACGUu--CGUGUAGAac -5'
13957 3' -56.2 NC_003521.1 + 109076 0.67 0.929647
Target:  5'- gUCCUcGCCGUCgUGCAGGUACAUg--- -3'
miRNA:   3'- -GGGAcCGGCGG-ACGUUCGUGUAgaac -5'
13957 3' -56.2 NC_003521.1 + 127762 0.67 0.907505
Target:  5'- aCCUGGUgGCCauccUGCGAcuggugacGCGCAUCUc- -3'
miRNA:   3'- gGGACCGgCGG----ACGUU--------CGUGUAGAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.