miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13957 3' -56.2 NC_003521.1 + 66094 0.66 0.934612
Target:  5'- uUCUUGGCCgucucgGCCUGCuuguccAGCAUGgUCUUGa -3'
miRNA:   3'- -GGGACCGG------CGGACGu-----UCGUGU-AGAAC- -5'
13957 3' -56.2 NC_003521.1 + 101170 0.66 0.94386
Target:  5'- uCCCUcuccucagacGGCguccgCGCCcgGCGGGCGgAUCUUGa -3'
miRNA:   3'- -GGGA----------CCG-----GCGGa-CGUUCGUgUAGAAC- -5'
13957 3' -56.2 NC_003521.1 + 87925 0.66 0.948146
Target:  5'- -gCUGGCCGCCgcgcCGGGCAUGcUCUUc -3'
miRNA:   3'- ggGACCGGCGGac--GUUCGUGU-AGAAc -5'
13957 3' -56.2 NC_003521.1 + 145239 0.66 0.948146
Target:  5'- gCCUucgugagcGGCUGCCUGCAgGGCGCcUCc-- -3'
miRNA:   3'- gGGA--------CCGGCGGACGU-UCGUGuAGaac -5'
13957 3' -56.2 NC_003521.1 + 102337 0.66 0.948562
Target:  5'- gCgUGGgCGCCgacgccgggguggcgGCAGGCGC-UCUUGa -3'
miRNA:   3'- gGgACCgGCGGa--------------CGUUCGUGuAGAAC- -5'
13957 3' -56.2 NC_003521.1 + 217592 0.66 0.952209
Target:  5'- cCCCgGGuCCGCCccggaccaGCAGGgGCGUCUc- -3'
miRNA:   3'- -GGGaCC-GGCGGa-------CGUUCgUGUAGAac -5'
13957 3' -56.2 NC_003521.1 + 196313 0.66 0.955679
Target:  5'- cCCCUGcGCCGCCugacgacggcggcUGCAgcucgauuuccAGCGCGUg--- -3'
miRNA:   3'- -GGGAC-CGGCGG-------------ACGU-----------UCGUGUAgaac -5'
13957 3' -56.2 NC_003521.1 + 66659 0.66 0.956053
Target:  5'- uUCgUGcGCgGCCUGCAGGCccuggaGCGUCa-- -3'
miRNA:   3'- -GGgAC-CGgCGGACGUUCG------UGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 168880 0.66 0.956053
Target:  5'- uCCCUGGCgGaCUUGCGaaugAGCgACGUCc-- -3'
miRNA:   3'- -GGGACCGgC-GGACGU----UCG-UGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 52184 0.66 0.94386
Target:  5'- aCgUGuGCCGCCggggcgGCGAGCuCAUCa-- -3'
miRNA:   3'- gGgAC-CGGCGGa-----CGUUCGuGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 110154 0.66 0.94342
Target:  5'- aCCCguggaaGGCCGCCaugaugGCGcucauauccagauAGUugAUCUUGa -3'
miRNA:   3'- -GGGa-----CCGGCGGa-----CGU-------------UCGugUAGAAC- -5'
13957 3' -56.2 NC_003521.1 + 160267 0.66 0.93935
Target:  5'- uCCCgGGuuGCCUGguGGUAgcCGUCg-- -3'
miRNA:   3'- -GGGaCCggCGGACguUCGU--GUAGaac -5'
13957 3' -56.2 NC_003521.1 + 109635 0.66 0.934612
Target:  5'- aCCUGGCCuGCCUGCc-GCugGa---- -3'
miRNA:   3'- gGGACCGG-CGGACGuuCGugUagaac -5'
13957 3' -56.2 NC_003521.1 + 192623 0.66 0.934612
Target:  5'- cCCCaacGCCGCCcgUGCGAGCACcgagcacccAUCUg- -3'
miRNA:   3'- -GGGac-CGGCGG--ACGUUCGUG---------UAGAac -5'
13957 3' -56.2 NC_003521.1 + 85661 0.66 0.93935
Target:  5'- gCCU-GCUGCCgGcCAAGCGCAgccgCUUGu -3'
miRNA:   3'- gGGAcCGGCGGaC-GUUCGUGUa---GAAC- -5'
13957 3' -56.2 NC_003521.1 + 76608 0.66 0.956053
Target:  5'- aCCUGGugcgcaagaCgGCCUGCGAGUuCGUCa-- -3'
miRNA:   3'- gGGACC---------GgCGGACGUUCGuGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 106073 0.66 0.93935
Target:  5'- aUCUGGCUGCCggGCAccguGGCcuGCGUCa-- -3'
miRNA:   3'- gGGACCGGCGGa-CGU----UCG--UGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 113691 0.66 0.934612
Target:  5'- aUCUGcGCCGCCUGgAGGUGCAcgacgcgcugcUCUUc -3'
miRNA:   3'- gGGAC-CGGCGGACgUUCGUGU-----------AGAAc -5'
13957 3' -56.2 NC_003521.1 + 65730 0.66 0.93935
Target:  5'- gCCCUGGCCGgCaaaAAGgGCAUCg-- -3'
miRNA:   3'- -GGGACCGGCgGacgUUCgUGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 76273 0.66 0.93935
Target:  5'- ---cGGCCGCCUGCGAG-ACcUCg-- -3'
miRNA:   3'- gggaCCGGCGGACGUUCgUGuAGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.