miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13957 3' -56.2 NC_003521.1 + 13319 0.67 0.901403
Target:  5'- gCCUGGgCUGCCUGCcguGGCAacuaAUCcUGu -3'
miRNA:   3'- gGGACC-GGCGGACGu--UCGUg---UAGaAC- -5'
13957 3' -56.2 NC_003521.1 + 52344 0.7 0.803418
Target:  5'- aCCCaGGCCcacgGCCUGCucguagcucggAGGCGCGUCa-- -3'
miRNA:   3'- -GGGaCCGG----CGGACG-----------UUCGUGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 142406 0.7 0.803418
Target:  5'- gCCCUGGCCGCCcu--GGCcaACGUCa-- -3'
miRNA:   3'- -GGGACCGGCGGacguUCG--UGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 122213 0.69 0.860244
Target:  5'- cUCCauGCUGCCUGCGAGCGCGgg-UGc -3'
miRNA:   3'- -GGGacCGGCGGACGUUCGUGUagaAC- -5'
13957 3' -56.2 NC_003521.1 + 156217 0.68 0.874804
Target:  5'- aCCUGGCCGUCaccgacGcCGAGCugGUCg-- -3'
miRNA:   3'- gGGACCGGCGGa-----C-GUUCGugUAGaac -5'
13957 3' -56.2 NC_003521.1 + 125631 0.68 0.881776
Target:  5'- uCCUUGGcCCGCa-GCAGGUACucgucgaugGUCUUGa -3'
miRNA:   3'- -GGGACC-GGCGgaCGUUCGUG---------UAGAAC- -5'
13957 3' -56.2 NC_003521.1 + 223816 0.68 0.881776
Target:  5'- gCCUGcGCCGCCgccaccGCGGGCGCcugCUg- -3'
miRNA:   3'- gGGAC-CGGCGGa-----CGUUCGUGua-GAac -5'
13957 3' -56.2 NC_003521.1 + 104053 0.68 0.888536
Target:  5'- cUCCgacGCCGUCUGCGccAGCACGUUggUGa -3'
miRNA:   3'- -GGGac-CGGCGGACGU--UCGUGUAGa-AC- -5'
13957 3' -56.2 NC_003521.1 + 53582 0.68 0.888536
Target:  5'- uCCCggGGCCGCCUcgAAGCuCA-CUUGg -3'
miRNA:   3'- -GGGa-CCGGCGGAcgUUCGuGUaGAAC- -5'
13957 3' -56.2 NC_003521.1 + 190989 0.7 0.803418
Target:  5'- aCCUggacGGCCGUCUGCAcGGCGCA-CUg- -3'
miRNA:   3'- -GGGa---CCGGCGGACGU-UCGUGUaGAac -5'
13957 3' -56.2 NC_003521.1 + 178882 0.7 0.803418
Target:  5'- gCgaGGCCGCCUGUu---GCGUCUUGa -3'
miRNA:   3'- gGgaCCGGCGGACGuucgUGUAGAAC- -5'
13957 3' -56.2 NC_003521.1 + 75257 0.7 0.794647
Target:  5'- gCCgaggagGGCCGgCUGCAcauGCACGUCa-- -3'
miRNA:   3'- gGGa-----CCGGCgGACGUu--CGUGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 64366 0.75 0.493991
Target:  5'- gCCCUGGacaUGCCcgaggUGCGGGCGCGUCUg- -3'
miRNA:   3'- -GGGACCg--GCGG-----ACGUUCGUGUAGAac -5'
13957 3' -56.2 NC_003521.1 + 151775 0.73 0.620982
Target:  5'- gCUgUGGCgCGCCUGCAGGUACAg---- -3'
miRNA:   3'- -GGgACCG-GCGGACGUUCGUGUagaac -5'
13957 3' -56.2 NC_003521.1 + 112789 0.73 0.640993
Target:  5'- -gCUGGCCGCCUaCGGGCACGcgcUCUg- -3'
miRNA:   3'- ggGACCGGCGGAcGUUCGUGU---AGAac -5'
13957 3' -56.2 NC_003521.1 + 73564 0.71 0.720135
Target:  5'- aCCUGGCCGUggUGCGGGCGCugGUCaUGa -3'
miRNA:   3'- gGGACCGGCGg-ACGUUCGUG--UAGaAC- -5'
13957 3' -56.2 NC_003521.1 + 136856 0.71 0.758243
Target:  5'- aCCCUGG--GCCUGCGcugucccgacaAGCGCAUCUc- -3'
miRNA:   3'- -GGGACCggCGGACGU-----------UCGUGUAGAac -5'
13957 3' -56.2 NC_003521.1 + 66567 0.71 0.758243
Target:  5'- aCCUGGCgCGCCagcGCAAcGUGCGUCUg- -3'
miRNA:   3'- gGGACCG-GCGGa--CGUU-CGUGUAGAac -5'
13957 3' -56.2 NC_003521.1 + 135953 0.7 0.767525
Target:  5'- gCCUcGGgCGCCUGCGacaugaGGCACGUCc-- -3'
miRNA:   3'- gGGA-CCgGCGGACGU------UCGUGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 150741 0.7 0.791988
Target:  5'- gUCCUgGGCCGgCUGCccggacugcuccgcGAGCGCGUCg-- -3'
miRNA:   3'- -GGGA-CCGGCgGACG--------------UUCGUGUAGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.