miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13957 3' -56.2 NC_003521.1 + 26198 1.11 0.002872
Target:  5'- aCCCUGGCCGCCUGCAAGCACAUCUUGg -3'
miRNA:   3'- -GGGACCGGCGGACGUUCGUGUAGAAC- -5'
13957 3' -56.2 NC_003521.1 + 151569 0.77 0.421887
Target:  5'- gCCUGGCCGCCuUGC--GCGCGUCg-- -3'
miRNA:   3'- gGGACCGGCGG-ACGuuCGUGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 130170 0.77 0.43933
Target:  5'- gCCCUGGCCuGCCUGCc-GCGCgAUCUc- -3'
miRNA:   3'- -GGGACCGG-CGGACGuuCGUG-UAGAac -5'
13957 3' -56.2 NC_003521.1 + 16837 0.76 0.457178
Target:  5'- uCCCcGGUCGCCUcGCAGGCGCAgCUUu -3'
miRNA:   3'- -GGGaCCGGCGGA-CGUUCGUGUaGAAc -5'
13957 3' -56.2 NC_003521.1 + 64366 0.75 0.493991
Target:  5'- gCCCUGGacaUGCCcgaggUGCGGGCGCGUCUg- -3'
miRNA:   3'- -GGGACCg--GCGG-----ACGUUCGUGUAGAac -5'
13957 3' -56.2 NC_003521.1 + 88128 0.75 0.541798
Target:  5'- gCCUGGCCagcGCCUGCGAGgACAcCUa- -3'
miRNA:   3'- gGGACCGG---CGGACGUUCgUGUaGAac -5'
13957 3' -56.2 NC_003521.1 + 88032 0.74 0.601003
Target:  5'- aCCUGGCCcugGCCUGCGccaccuguccgcAGCugGUCUc- -3'
miRNA:   3'- gGGACCGG---CGGACGU------------UCGugUAGAac -5'
13957 3' -56.2 NC_003521.1 + 151775 0.73 0.620982
Target:  5'- gCUgUGGCgCGCCUGCAGGUACAg---- -3'
miRNA:   3'- -GGgACCG-GCGGACGUUCGUGUagaac -5'
13957 3' -56.2 NC_003521.1 + 112789 0.73 0.640993
Target:  5'- -gCUGGCCGCCUaCGGGCACGcgcUCUg- -3'
miRNA:   3'- ggGACCGGCGGAcGUUCGUGU---AGAac -5'
13957 3' -56.2 NC_003521.1 + 32485 0.72 0.700613
Target:  5'- aCCUGGCCGUCugggccgcguUGCGAGC-CAUCc-- -3'
miRNA:   3'- gGGACCGGCGG----------ACGUUCGuGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 66823 0.72 0.710406
Target:  5'- gCgCUGGCgCGCCagGUcggugAAGCGCGUCUUGa -3'
miRNA:   3'- -GgGACCG-GCGGa-CG-----UUCGUGUAGAAC- -5'
13957 3' -56.2 NC_003521.1 + 25823 0.72 0.710406
Target:  5'- cCCCgcGGCCGCCUGCAcaacAGCGuccgcCGUCg-- -3'
miRNA:   3'- -GGGa-CCGGCGGACGU----UCGU-----GUAGaac -5'
13957 3' -56.2 NC_003521.1 + 113046 0.72 0.710406
Target:  5'- gCCCguaGGCgGCCaGCAGGCACAUg--- -3'
miRNA:   3'- -GGGa--CCGgCGGaCGUUCGUGUAgaac -5'
13957 3' -56.2 NC_003521.1 + 73564 0.71 0.720135
Target:  5'- aCCUGGCCGUggUGCGGGCGCugGUCaUGa -3'
miRNA:   3'- gGGACCGGCGg-ACGUUCGUG--UAGaAC- -5'
13957 3' -56.2 NC_003521.1 + 26027 0.71 0.729792
Target:  5'- cCCCUGGgCUGCCUGguGGUgcccggacACAUCgUGa -3'
miRNA:   3'- -GGGACC-GGCGGACguUCG--------UGUAGaAC- -5'
13957 3' -56.2 NC_003521.1 + 110244 0.71 0.739368
Target:  5'- aCCggcaGGCCGCCcuacUGCAGGCGCAggaCUUc -3'
miRNA:   3'- gGGa---CCGGCGG----ACGUUCGUGUa--GAAc -5'
13957 3' -56.2 NC_003521.1 + 224999 0.71 0.748854
Target:  5'- gCgCUGGCCGCCUGCGucggcgAGCACc----- -3'
miRNA:   3'- -GgGACCGGCGGACGU------UCGUGuagaac -5'
13957 3' -56.2 NC_003521.1 + 101757 0.71 0.758243
Target:  5'- gUCUGGCCGCCgcUGCucGAGCACcUCa-- -3'
miRNA:   3'- gGGACCGGCGG--ACG--UUCGUGuAGaac -5'
13957 3' -56.2 NC_003521.1 + 66567 0.71 0.758243
Target:  5'- aCCUGGCgCGCCagcGCAAcGUGCGUCUg- -3'
miRNA:   3'- gGGACCG-GCGGa--CGUU-CGUGUAGAac -5'
13957 3' -56.2 NC_003521.1 + 136856 0.71 0.758243
Target:  5'- aCCCUGG--GCCUGCGcugucccgacaAGCGCAUCUc- -3'
miRNA:   3'- -GGGACCggCGGACGU-----------UCGUGUAGAac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.