miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13957 3' -56.2 NC_003521.1 + 3922 0.66 0.941181
Target:  5'- uCCC-GGCCGCCgagGCAgacggcggcggccguGGCACG-CUa- -3'
miRNA:   3'- -GGGaCCGGCGGa--CGU---------------UCGUGUaGAac -5'
13957 3' -56.2 NC_003521.1 + 13319 0.67 0.901403
Target:  5'- gCCUGGgCUGCCUGCcguGGCAacuaAUCcUGu -3'
miRNA:   3'- gGGACC-GGCGGACGu--UCGUg---UAGaAC- -5'
13957 3' -56.2 NC_003521.1 + 16837 0.76 0.457178
Target:  5'- uCCCcGGUCGCCUcGCAGGCGCAgCUUu -3'
miRNA:   3'- -GGGaCCGGCGGA-CGUUCGUGUaGAAc -5'
13957 3' -56.2 NC_003521.1 + 25823 0.72 0.710406
Target:  5'- cCCCgcGGCCGCCUGCAcaacAGCGuccgcCGUCg-- -3'
miRNA:   3'- -GGGa-CCGGCGGACGU----UCGU-----GUAGaac -5'
13957 3' -56.2 NC_003521.1 + 26027 0.71 0.729792
Target:  5'- cCCCUGGgCUGCCUGguGGUgcccggacACAUCgUGa -3'
miRNA:   3'- -GGGACC-GGCGGACguUCG--------UGUAGaAC- -5'
13957 3' -56.2 NC_003521.1 + 26198 1.11 0.002872
Target:  5'- aCCCUGGCCGCCUGCAAGCACAUCUUGg -3'
miRNA:   3'- -GGGACCGGCGGACGUUCGUGUAGAAC- -5'
13957 3' -56.2 NC_003521.1 + 27691 0.68 0.867625
Target:  5'- gCCUGGgCUGCCUGgAGGCcuacgugcGCAUCa-- -3'
miRNA:   3'- gGGACC-GGCGGACgUUCG--------UGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 28551 0.67 0.929647
Target:  5'- gCCCUGGCCaGCCUGguGGacccCGUgUUc -3'
miRNA:   3'- -GGGACCGG-CGGACguUCgu--GUAgAAc -5'
13957 3' -56.2 NC_003521.1 + 32485 0.72 0.700613
Target:  5'- aCCUGGCCGUCugggccgcguUGCGAGC-CAUCc-- -3'
miRNA:   3'- gGGACCGGCGG----------ACGUUCGuGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 40743 0.67 0.929647
Target:  5'- gCCgUGGCgCGCC-GCGGaCACAUCUa- -3'
miRNA:   3'- -GGgACCG-GCGGaCGUUcGUGUAGAac -5'
13957 3' -56.2 NC_003521.1 + 43251 0.68 0.888536
Target:  5'- ---cGGCCGUCUGCAGGU-CGUCggUGg -3'
miRNA:   3'- gggaCCGGCGGACGUUCGuGUAGa-AC- -5'
13957 3' -56.2 NC_003521.1 + 43750 0.66 0.948146
Target:  5'- -gUUGGCCGCCgcgGCcAGCACGg---- -3'
miRNA:   3'- ggGACCGGCGGa--CGuUCGUGUagaac -5'
13957 3' -56.2 NC_003521.1 + 45882 0.66 0.952209
Target:  5'- --gUGGCCGUCUGCGucGGCGCugauGUCg-- -3'
miRNA:   3'- gggACCGGCGGACGU--UCGUG----UAGaac -5'
13957 3' -56.2 NC_003521.1 + 47683 0.66 0.956053
Target:  5'- gCCCUGGCC-CgaGCGAuGCuACAUCc-- -3'
miRNA:   3'- -GGGACCGGcGgaCGUU-CG-UGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 52184 0.66 0.94386
Target:  5'- aCgUGuGCCGCCggggcgGCGAGCuCAUCa-- -3'
miRNA:   3'- gGgAC-CGGCGGa-----CGUUCGuGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 52344 0.7 0.803418
Target:  5'- aCCCaGGCCcacgGCCUGCucguagcucggAGGCGCGUCa-- -3'
miRNA:   3'- -GGGaCCGG----CGGACG-----------UUCGUGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 52810 0.67 0.915669
Target:  5'- aCCUGGaCCGCCuucacggugaaaaucUGCA-GCACGUUg-- -3'
miRNA:   3'- gGGACC-GGCGG---------------ACGUuCGUGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 53582 0.68 0.888536
Target:  5'- uCCCggGGCCGCCUcgAAGCuCA-CUUGg -3'
miRNA:   3'- -GGGa-CCGGCGGAcgUUCGuGUaGAAC- -5'
13957 3' -56.2 NC_003521.1 + 53710 0.69 0.820507
Target:  5'- gCCCUGGCCGCC---GAGCugGUg--- -3'
miRNA:   3'- -GGGACCGGCGGacgUUCGugUAgaac -5'
13957 3' -56.2 NC_003521.1 + 56250 0.67 0.919032
Target:  5'- gCCgUGGaCCGgCUGCGGccccuGCACAUCggcgUGg -3'
miRNA:   3'- -GGgACC-GGCgGACGUU-----CGUGUAGa---AC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.