miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13957 3' -56.2 NC_003521.1 + 236843 0.66 0.952604
Target:  5'- -gCUGGCUGCCgugagauggcacacgGCGAGCACGa---- -3'
miRNA:   3'- ggGACCGGCGGa--------------CGUUCGUGUagaac -5'
13957 3' -56.2 NC_003521.1 + 226898 0.66 0.952209
Target:  5'- ---aGGCCGCgaGCAAGCugGUgUg- -3'
miRNA:   3'- gggaCCGGCGgaCGUUCGugUAgAac -5'
13957 3' -56.2 NC_003521.1 + 226601 0.67 0.929647
Target:  5'- aCCCgcgGGgCGCgC-GCAccauGCACAUCUUGu -3'
miRNA:   3'- -GGGa--CCgGCG-GaCGUu---CGUGUAGAAC- -5'
13957 3' -56.2 NC_003521.1 + 224999 0.71 0.748854
Target:  5'- gCgCUGGCCGCCUGCGucggcgAGCACc----- -3'
miRNA:   3'- -GgGACCGGCGGACGU------UCGUGuagaac -5'
13957 3' -56.2 NC_003521.1 + 223909 0.7 0.776692
Target:  5'- gCgCUGGCaGCUggGCAGGCGCAUCgUGg -3'
miRNA:   3'- -GgGACCGgCGGa-CGUUCGUGUAGaAC- -5'
13957 3' -56.2 NC_003521.1 + 223816 0.68 0.881776
Target:  5'- gCCUGcGCCGCCgccaccGCGGGCGCcugCUg- -3'
miRNA:   3'- gGGAC-CGGCGGa-----CGUUCGUGua-GAac -5'
13957 3' -56.2 NC_003521.1 + 217592 0.66 0.952209
Target:  5'- cCCCgGGuCCGCCccggaccaGCAGGgGCGUCUc- -3'
miRNA:   3'- -GGGaCC-GGCGGa-------CGUUCgUGUAGAac -5'
13957 3' -56.2 NC_003521.1 + 216810 0.68 0.895079
Target:  5'- uCCCUGGCCGC-UGCAcuguGCugGcUCg-- -3'
miRNA:   3'- -GGGACCGGCGgACGUu---CGugU-AGaac -5'
13957 3' -56.2 NC_003521.1 + 215235 0.67 0.929647
Target:  5'- cCCCUGGCCGCC-GCcaAAGucuuccucaacCugGUCUUu -3'
miRNA:   3'- -GGGACCGGCGGaCG--UUC-----------GugUAGAAc -5'
13957 3' -56.2 NC_003521.1 + 214617 0.66 0.952209
Target:  5'- gCCUGGgagcaCCGCCUGCGcgcucucuGGCGCGaugcgcUCUUc -3'
miRNA:   3'- gGGACC-----GGCGGACGU--------UCGUGU------AGAAc -5'
13957 3' -56.2 NC_003521.1 + 214473 0.68 0.881088
Target:  5'- aUCCUGGCCGUCcucuuucaggacgUGCG-GCACGUUg-- -3'
miRNA:   3'- -GGGACCGGCGG-------------ACGUuCGUGUAGaac -5'
13957 3' -56.2 NC_003521.1 + 212810 0.67 0.928113
Target:  5'- cCCCUGGCCGUCguggGCcuguguuucgacaaGAGCcuCAUCa-- -3'
miRNA:   3'- -GGGACCGGCGGa---CG--------------UUCGu-GUAGaac -5'
13957 3' -56.2 NC_003521.1 + 209194 0.67 0.919032
Target:  5'- cUCUUGGCCGUCuugaUGUugGGGUACGUCUUc -3'
miRNA:   3'- -GGGACCGGCGG----ACG--UUCGUGUAGAAc -5'
13957 3' -56.2 NC_003521.1 + 206436 0.71 0.758243
Target:  5'- gCCCUGGCCGcCCUGCuccuGgGCuUCUc- -3'
miRNA:   3'- -GGGACCGGC-GGACGuu--CgUGuAGAac -5'
13957 3' -56.2 NC_003521.1 + 196313 0.66 0.955679
Target:  5'- cCCCUGcGCCGCCugacgacggcggcUGCAgcucgauuuccAGCGCGUg--- -3'
miRNA:   3'- -GGGAC-CGGCGG-------------ACGU-----------UCGUGUAgaac -5'
13957 3' -56.2 NC_003521.1 + 192623 0.66 0.934612
Target:  5'- cCCCaacGCCGCCcgUGCGAGCACcgagcacccAUCUg- -3'
miRNA:   3'- -GGGac-CGGCGG--ACGUUCGUG---------UAGAac -5'
13957 3' -56.2 NC_003521.1 + 190989 0.7 0.803418
Target:  5'- aCCUggacGGCCGUCUGCAcGGCGCA-CUg- -3'
miRNA:   3'- -GGGa---CCGGCGGACGU-UCGUGUaGAac -5'
13957 3' -56.2 NC_003521.1 + 189397 0.66 0.951813
Target:  5'- aCCCcGGuacuccacuuacuCCGCCUGCAGGUAUcUCa-- -3'
miRNA:   3'- -GGGaCC-------------GGCGGACGUUCGUGuAGaac -5'
13957 3' -56.2 NC_003521.1 + 181382 0.7 0.767525
Target:  5'- aCUCgGGUCGCCUGguGGCGCAauUCg-- -3'
miRNA:   3'- -GGGaCCGGCGGACguUCGUGU--AGaac -5'
13957 3' -56.2 NC_003521.1 + 178882 0.7 0.803418
Target:  5'- gCgaGGCCGCCUGUu---GCGUCUUGa -3'
miRNA:   3'- gGgaCCGGCGGACGuucgUGUAGAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.